Lepeophtheirus salmonis (salmon louse): 121132551
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Entry
121132551 CDS
T08214
Symbol
Rat1
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03008
Ribosome biogenesis in eukaryotes
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121132551 (Rat1)
09123 Folding, sorting and degradation
03018 RNA degradation
121132551 (Rat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121132551 (Rat1)
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121132551 (Rat1)
03009 Ribosome biogenesis [BR:
lsm03009
]
121132551 (Rat1)
03016 Transfer RNA biogenesis [BR:
lsm03016
]
121132551 (Rat1)
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121132551 (Rat1)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
121132551 (Rat1)
Ribosome biogenesis [BR:
lsm03009
]
Eukaryotic type
Pre-60S particles
RNases
121132551 (Rat1)
Transfer RNA biogenesis [BR:
lsm03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
121132551 (Rat1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
PTS_EIIB
Motif
Other DBs
NCBI-GeneID:
121132551
NCBI-ProteinID:
XP_040583911
LinkDB
All DBs
Position
2:complement(5621237..5639278)
Genome browser
AA seq
960 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIIECLEQKNSLGIPVDSTEPNPNGVEFDNLYLDMNGIIHPCTH
PEDKPAPQTEDKMMVDIFECIDRLFAIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRASKE
SAEKVLTLARLREELSDKGLHLPAEKKDKIHFDSNCITPGTPFMDRLSKCLQYYIYERLN
TDNAWKGIKVFLSDANVPGEGEHKIMDFIRRQRAQPNHDANTQHVLCGADADLIMLGLAT
HEPHFTIIREEFKPNRPRPCELCRQMGHDMTDCVGFADKPKETDSDPVFGEETKYIFVRL
SVLREYLRRDLDMPNLPFPYDFEKAIDDWIFMCFFVGNDFLPHLPSLEIREGAIDRLVRL
YKNAVYNTGGFLTDSGIVNPNRVQLIMKELGQMEDSIFQERQRRELQFRARNKANKQSLE
SSRAPAWIPKGQFKPQALGGKRNVDSIKNCKEEAYNMRVEGLKEGKRSLDNDSDDDEPPD
EVRLYEDGFKDRYYESKFGVLPQDCDFRYRVAAEYTRGLCWVLRYYYQGCASWKWYFPYH
YAPFASDFKDVDQSDIIFEKGTQPFKPMEQLMSVFPAASKSHVPDKWGSLMWNPDSLIID
FYPEDFKIDLNGKKFAWQGVALLPFVDENRLKRALEPVYELLSEEEVRRNQRGDDLLFIR
NGHPGYDKLKSIYSENGEYNKVFKMDAQLFEGVSGTILFSDCNIVEEGSVRSPVSELADW
HDNKAICVRYRDPEYAEGYIFPAKRLQNAKDPPCILKPEDLNPRNNREWRPNFGFRGGRG
RGRGGENQASLDSAGHRMLNHNLNRGTNIPPPSNFGWNSNDSPSSNKGGRRNRGSGRGDY
GDNNRNSNRREDNRAAGWNEHHKNPESYQRRGHQNNQGGSWRSNSRGNSNEDWRNRGRGG
SSYSNFGSSGRGRGGNREHHEGQGSGYSSNNRNKNDNDSRRGGGAGDSSSYGYYTNNYGR
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcattttttcgttggctttcgagaaaatatccaagtgtgatcattgag
tgtctggagcaaaagaattcgttaggtattccagtggattcgacggagcccaatccaaat
ggggtggagtttgataacttgtatctggatatgaatgggattattcacccttgtacacat
cctgaagataaacctgctcctcaaacagaagataaaatgatggttgacatttttgaatgc
attgatcgcctatttgctattgtaaggccacgcaaagtactttatatggccattgatgga
gttgctcctcgcgccaaaatgaatcaacaacgctctagaagattccgtgcttccaaagaa
tctgcggaaaaagtattaaccttagctcgactaagggaggagttgtcagacaaaggtctc
catttacctgcagaaaaaaaagataaaattcactttgacagtaattgtattactcctggt
acaccttttatggatagactttccaagtgtctacaatattatatctatgaaagacttaat
acagataatgcctggaagggtattaaggtattcctttcagatgctaatgttcctggggaa
ggagaacataaaataatggactttattcgtcgacaaagagctcaaccaaatcatgacgct
aatacacaacatgttctatgtggagctgatgcagatctaataatgttagggctagcaaca
cacgaaccccactttacgattattcgtgaagagtttaagccaaacaggccaaggccttgt
gaactttgccgtcaaatgggacacgatatgactgattgtgttggttttgcggacaaacca
aaagaaactgactcagatcctgtttttggtgaagaaacaaaatacatttttgtgaggctt
tctgtattgagggaatatttaagaagagatctggacatgcctaatcttccttttccatat
gatttcgaaaaagcaatcgatgattggatatttatgtgttttttcgttgggaatgatttt
ttgcctcatctacctagtcttgaaattcgggaaggagctattgatcgacttgtcagattg
tacaaaaatgcagtttacaatacagggggtttcttaactgatagtggaatagtaaatcca
aatagagtacagctcataatgaaggaattgggacaaatggaagactccatttttcaagag
agacaaaggcgtgagcttcaatttcgagcccgaaataaagcaaataagcagtcacttgag
tctagtagagcacctgcatggattcctaagggtcaatttaaaccccaagcacttggagga
aagagaaatgttgattcaattaaaaattgcaaagaagaagcatacaacatgagggttgaa
ggattaaaagaaggtaaaagatccctggacaatgattcagatgatgacgaacctccagat
gaagttcgtttgtatgaagatgggtttaaggatcgttactatgaatcaaagtttggtgtt
ttgcctcaggattgtgattttcgataccgtgttgcagctgaatacactcgtggtctttgt
tgggtattgagatattattaccagggctgtgcgtcgtggaagtggtattttccatatcat
tatgccccttttgcatctgattttaaagatgttgatcaatctgacataatttttgaaaaa
ggaactcaaccatttaaacccatggagcaacttatgagtgtatttccagctgcatcaaaa
tctcacgtacctgacaaatggggaagtttaatgtggaatccagactctttaattattgat
ttttatcctgaagattttaaaattgatttgaacggtaaaaaatttgcctggcagggagtt
gcacttcttccatttgtcgatgagaatcgcttgaaaagagcccttgaacccgtatatgaa
ttgctttctgaggaagaggtacgtagaaatcagcgtggggatgatttgttattcatacgt
aatggtcatccaggatatgataagcttaaatctatttactctgaaaatggtgaatacaac
aaagtatttaaaatggatgctcagctttttgagggagttagtggaacaatactcttctct
gactgtaatatcgtagaagagggatccgtccgatcacctgtatcagagcttgccgactgg
catgataataaagcaatttgtgtgagatatcgagatcctgaatacgctgagggttacata
tttcctgcaaagcggttacaaaacgcaaaggatcctccttgcattttaaaacctgaagat
ttaaatccgcgtaataatagggagtggaggcccaatttcggatttagaggtggaagaggt
agaggaagaggtggtgaaaatcaagcaagtttagattcagccggtcatcgtatgctcaac
cataatttgaatcgaggaacaaatattcctccaccatcgaattttggttggaactcaaat
gattcgccttcatctaataaaggaggcagaagaaatcggggaagtggaaggggagattac
ggtgataataatagaaactcgaataggagagaagacaatcgtgccgctggttggaatgaa
caccacaagaatcctgaatcttatcaaagacgtggtcatcaaaataatcaaggaggttct
tggcgcagcaattcccggggaaatagtaatgaagattggcgtaatagaggaagaggcggt
agcagttactctaattttggctcctctggtcgaggtcgcggtggcaatagagaacatcat
gaaggacaaggctcaggatattcttctaacaatagaaataagaatgataatgattccagg
agaggtggcggggctggggattcctcttcatacgggtattacaccaacaactatggaaga
taa
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