Candidatus Liberibacter solanacearum: CKC_05200
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Entry
CKC_05200 CDS
T01373
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lso
Candidatus Liberibacter solanacearum
Pathway
lso03030
DNA replication
lso03430
Mismatch repair
lso03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKC_05200 (dnaE)
03430 Mismatch repair
CKC_05200 (dnaE)
03440 Homologous recombination
CKC_05200 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lso03032
]
CKC_05200 (dnaE)
03400 DNA repair and recombination proteins [BR:
lso03400
]
CKC_05200 (dnaE)
Enzymes [BR:
lso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CKC_05200 (dnaE)
DNA replication proteins [BR:
lso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CKC_05200 (dnaE)
DNA repair and recombination proteins [BR:
lso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CKC_05200 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
PIN-like_DDX60
Motif
Other DBs
NCBI-ProteinID:
ADR52786
UniProt:
E4UDV8
LinkDB
All DBs
Position
complement(1116198..1119878)
Genome browser
AA seq
1226 aa
AA seq
DB search
MVFISNPSPKNIMSLNQQVERSPGFVHLQVHSSYSLLEGALSLNNILDKAIADQQPAIAI
TDTNNLFGALEFSQKACLAGIQPIIGCQIEIDMQDGLEVTHKGKSFFPELPSIVLLVSKA
EGYQRLIELVSRMYLLNQGHKSVRIYFSWLQEIGTEGLIMLTGGSSGSIDRAFLFNNPQI
AEKRLLSFKNIFGNRLYVNLQRHRGYDRYRESQVIQLAYKHELPLVATNNALFLSQEDYD
AHDVLMAVAHSTVISQEDRPRVTPDHYLKNRAEMLSMFADLPEALDNTVEIARRCSFILQ
VHKPILPRFIDKECDDFEKIEENELRTKAIEGLETRLSQGIIAKGYSAQDYRKRLDFELD
VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER
FLNPDRMSMPDFDIDFCQDRRDEVIQYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ
MPYSQVDRLCKLIPNNPAHPVSLKQAIADDSRFQEAILDDPFVDRLLEISLKLEGLYRHA
STHAAGIVIGDRPLSQLIPMYRDVRSDIPVTQFNMKWVEKAGLVKFDFLGLKTLTVLQKS
LDLLEQRGIKVDLSLIPFDDHETYHLLTKKGTLGIFQLESSGMRQALEGMQPDCIEDIIA
LVSLYRPGPIENITIYNNRKNGKEKIVSIHPLIDSILKETQGVIVYQEQVMQIAQLLSGY
SLSEADVLRRAMGKKIKEEMDKQKERFVSGASKNGLSNIMAVNIFELLAKFADYGFNKSH
AAAYAVISYRTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIILPSVQTSC
VDFEVGEKCIYYSLAAIKGVGTITAHHIMTVRADKPFESLEDFCSRVDSKQLNRRVLESL
IFAGALDCFGYSREQLYQSLDNIQKYAQWIEKNRTNDQANIFVDEEGSFSEKISLEEFSV
ENSSARFEHERRVLGFYFSGHPLDVYKAILQKMGIKSYEESIASVKESIIRLAVMVMSKE
QKKTRKGSRIGWVTFSEPDKEYEGIFFPNYNSSNRKKTSNKNRDFLTLEDCYDHSIERKL
QEAEEDPNFLSVQEQRKLEKKKPYLLREKNPYIIFVSQEDMVSVKRDSVRLLLVQSLKNK
SMEMLVSLKIYLQDHSPLTEIHKYFQNRQVQHHDKHGKIDLVFVRLQEEIELEITLDQYP
ISLEISFDLEHIAGIMKVVPIIRDES
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggttttcatcagtaatccttcaccaaaaaatattatgtccttgaatcaacaagtagaa
cgatcgccaggttttgtacatttgcaagtacattcgtcatattcattattggagggagct
ctttctttaaataatattttggataaagctattgcagatcaacagcctgctattgccatt
actgatacgaacaatctttttggagcattggaattttcgcaaaaggcttgtttagctggt
attcagcctattattggatgtcagatcgagattgatatgcaagatggtttagaggtcact
cataagggaaaatcatttttcccagagctaccatctattgttcttttagtatccaaggct
gaaggttatcaaagattaattgaacttgtaagccgtatgtatcttttgaatcaagggcat
aaatctgttcgtatttatttctcttggttgcaagagataggaacagaagggcttattatg
ttaacaggcgggagttctggttcaatagatagagctttcttgtttaataatcctcaaata
gcggaaaaaagacttctttcttttaaaaatatttttggtaatcgtctctatgtcaatttg
cagcgtcataggggatacgatcgttatcgtgaaagtcaagtcattcaattagcttataag
catgaattacccttggtcgcaaccaataatgcgttatttctatcccaagaagattatgat
gcgcatgatgtattgatggcagttgcacattcaactgtgatatctcaagaagatcgtcca
cgtgtaacgcctgatcattatttaaagaatcgtgctgagatgttgtctatgtttgcagat
ttgccagaagctttggataatactgtggaaatcgctaggcgttgttcttttattcttcaa
gtgcataaaccaattttgccacgttttattgacaaagaatgtgatgattttgaaaaaata
gaagaaaatgaattgcgaacaaaagctatagaaggattagaaacacgtctttctcaaggg
ataatagctaaaggatacagtgcgcaagattatagaaaacgtcttgattttgagttggat
gtaatcgcacgtatgaagttttctggatatttcttgatcgttgcggattttatacagtgg
gctaaaaaaaacaatattccagtaggtcctgggcgtggttcaggagctggttctgtaact
gcatatgctttgacgattaccgatattgaccctttacgtttttcactactctttgaacga
tttttaaatccagatcggatgtctatgccggattttgatattgatttttgtcaagatcga
cgtgatgaagtcattcaatatgtgcaaaataaatatgggcatgaacgggttgctcaaatt
attacttttggatctttacaagcgaaagctgcgttgcgtgatgttggacgcgccttacag
atgccttattctcaagttgatcgtctttgtaagttaattcccaataatccagcacatcct
gtatctcttaagcaggctatcgccgatgattctcgctttcaagaagcaatcttagatgat
ccttttgtagatcgtcttcttgaaatttctctgaaattagaagggttatatcgacatgca
tctactcatgcagcgggtattgtcattggtgatcgtcccttatctcaattaattcctatg
tatcgtgatgtacgatccgatattcctgtcacacagtttaatatgaaatgggttgaaaaa
gctggcttagttaaatttgattttttaggtcttaagacgctgactgtcttgcaaaaaagc
ctagatttactagagcaacgaggaataaaagttgatctatcgttgattccttttgatgat
catgagacttatcatcttttaacaaagaaaggaacgctggggatattccaattggaaagt
tctggaatgcgtcaggctttggaaggtatgcaaccagattgtattgaagatattattgct
ctggtttcgttatatcgtccaggtccaattgagaatattacgatttataataatcgcaaa
aatggaaaagaaaaaattgtttctattcatccattaattgattctattttaaaagaaaca
caaggagttattgtttatcaagaacaagttatgcaaatagcccaattgctttcaggatat
tctctcagtgaagcagatgttttgcgacgtgcgatggggaagaaaattaaagaagaaatg
gacaaacagaaagagcgtttcgtttctggagcaagtaaaaatggtctcagcaatataatg
gctgtgaatatttttgaactgttagcaaaatttgcagattatggattcaataaatcgcat
gcagcggcctatgcggttatttcttatcgaactgcatggatgaaaacgcattatcctgtt
gaatttttagctgcttccatgactttggaaatggataatgtagaaaagattaagaaattt
tgtcaggatgctcggcaatttaatattcaaattattcttccatctgttcagacttcgtgt
gtggattttgaagtaggagaaaaatgtatttattattctttggctgctatcaaaggagtg
ggaacgataacagcccatcatattatgacagtgcgtgcagataaaccttttgaaagttta
gaggatttttgttcgagagttgattcaaaacaattaaatcgtcgagtattagaaagtctc
atttttgcaggggctttagattgttttggctatagtcgcgagcaattatatcaatcactt
gataatattcaaaagtatgcgcagtggattgaaaaaaatcgtacaaatgatcaagcaaat
atctttgttgatgaggagggatctttttctgaaaaaatttccttggaagagttttcggtt
gagaattcttctgcgcgatttgaacatgaaaggcgggtattaggtttttatttttcagga
catcctcttgatgtttacaaggcaatattgcaaaaaatgggtattaagagctatgaagaa
agtattgcttctgtcaaagagagtattatcagattagcagtgatggtgatgtctaaagaa
caaaagaaaacacgaaagggatctagaataggttgggttactttttctgagccggataag
gaatatgaggggatcttttttccaaactataatagtagtaatagaaaaaaaacatccaat
aagaatcgtgattttctgacacttgaagattgttatgatcattcgatagaaagaaaatta
caggaagcagaagaagatcctaattttttatcggtgcaagaacaacggaagttagaaaag
aaaaaaccttatttattaagagaaaaaaatccgtatattatttttgtttctcaagaagat
atggtttctgtaaaaagagattcggttcgtttattgttggtgcaatctctgaaaaataaa
tccatggaaatgttagtttctctaaaaatatatcttcaggatcatagcccccttacagag
attcataaatattttcagaatcgtcaagttcaacatcatgataaacatggtaagatagat
ttggtttttgttaggttgcaggaagaaattgaactagaaataacgcttgatcaatatccc
atatcgttggaaatttctttcgatcttgagcatattgcgggtataatgaaggttgttcca
ataatacgtgatgaaagttaa
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