Lysobacter soli: GOY17_04275
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Entry
GOY17_04275 CDS
T06337
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lsol
Lysobacter soli
Brite
KEGG Orthology (KO) [BR:
lsol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsol03019
]
GOY17_04275 (hrpA)
Enzymes [BR:
lsol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GOY17_04275 (hrpA)
Messenger RNA biogenesis [BR:
lsol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GOY17_04275 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_19
AAA_22
AAA_23
AAA_30
nSTAND3
SRP54
nSTAND_NTPase5
AAA_25
NACHT
T2SSE
Cas3-like_C_2
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QGW64201
LinkDB
All DBs
Position
934414..938361
Genome browser
AA seq
1315 aa
AA seq
DB search
MKSMDPAESSHASVSNALRQARRAIDGALSRDRGRLHGLWSRWSGKPGDERARDAFATAL
AASVAQREARTVALPAAPVDSSLPIAAKADEIVELIRAHPVVVIAGETGSGKTTQLPKLC
LAAGRGAAGMIGCTQPRRIAARAVARRVAEELQTQLGGAVGYQVRFTENVGEQTAVKFMT
DGILLAEIQSDRWLSQYDTILVDEAHERSLNIDFLLGYLKQLLQKRKDLKVIVTSATIDT
ERFAAHFGDAPVVNVEGRSYPVSVRYRPLEGEGEDDGDRTTNDGIVAACDEITREDPRGD
VLIFLPGEREIRDAHLSLERRKYRETEVLPLYARLSVRDQDRVFNPGPKRRIVLATNVAE
TSLTVPRIRYVVDPGLARVKRYSPRGKLDRLHIEPVSQASADQRKGRCGRISEGTCYRLY
SEADFESRPRYTDPEIRRAALAGVILRMLSLGLGRIEEFPFLEPPDPRAIADGWQQLAEL
GAVDEQRRLTPIGKLMSRLPVDVKLARMLVAANEHGVLREMLVIASFLGIQDPRERPADQ
RAAADNAHAQFADPKSEFVGIIKLWNAYNTAHEELTQSKLRGWCEKNFLGFLRMREWREL
HRQLKLMAEELQWKESRAALNEHGALDQSAYATLHKALLAGLPTQIGTRSDKGFDGPRGR
KFQLFPGSPLAKKPPPWVLSATLLDTERVWALTNAAIEPDWAIAELSHLLSRRQHDPRWS
RSQGRVIGSEQISLFGLVLAPKRPVHYGALFPEESRTIFARDALVTGEINTRSQFLPRNL
ATLAKARDEEAKQRRSGLVVDEEWMAQWYLDRLPAHVHNAQALDAWYAKLPQPEKAALEW
SLSDLMIGDESDAVRFPPYLALGNVRLEVKYRFEPGATDDGMTLAVPLHLLNALDAVRLT
WLAPGFVQDKAAALIKTLPKTLRRNFVPAPDFARAFHEAHQQPSADTITGELARFLHRLG
GVAVAGTDFDESALEPHLRMNLRLFDRDGKTVLAESRDLDDLRARFGERAAAAFAAKAAD
GLAQRGLTTFPDAPIPASVPGAGGVPAYPALHDDGDSASLRVHAERDVALREHPRGVRRL
LAIALADKLKQARKQLPVTPKMGLLYASIEAAAPRVDGLKEGDRLRADLVDGAFASMTDD
AAVGDVRDAATFAARRDAIGKQVFGDAMERLRQAETILAAVAEARAKLESPLMGWASGNL
DDMRAHLATLTPPGFLRSVPADALREYPRYLKALALRGERALRDPVRDQARMLELKPFAD
ALADAVRSGEADASDWQALRWDLEELRVSLFAQELGTRGGVSPKKLAQRLAQLRR
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctatggatccggcggagtctagtcacgccagtgtcagcaatgcgttacgccag
gcccggcgcgccatcgatggtgcgctgagtcgcgaccgtggccggctgcatggattgtgg
tcgcgatggagcggaaaacccggcgacgagcgcgcgcgcgatgccttcgcgacggcgctg
gcggcgtccgtggcccagcgcgaagcccgaaccgtcgcgctgcccgcggcacccgtcgac
tcgagcctgcccatcgccgccaaggccgacgagatcgtcgaactgatccgcgcccatccg
gtcgtggtcatcgccggcgaaaccggttcgggcaagaccacgcagctgccgaaactgtgc
ctggccgcgggccgcggcgccgcgggcatgatcggctgcacccagccgcgccgcatcgcc
gcgcgcgccgtagcgcgccgcgtggcggaggaactgcagacgcagctcggcggcgcggtc
ggctaccaggtgcgcttcaccgagaacgtcggcgagcagaccgcggtcaagttcatgacg
gacggcatcctgttggccgagatccagtccgaccgctggctgtcgcagtacgacaccatc
ctcgtcgacgaggcgcacgaacgcagcctcaacatcgacttcctgctcggctacctcaag
cagctgttgcagaagcgaaaggacctgaaggtcatcgtcacctcggcgacgatcgacacc
gaacgcttcgccgcgcatttcggcgatgcaccggtggtgaacgtggaaggtcgcagctac
ccggtgtcggtgcgctatcgcccgttggaaggcgagggcgaagacgacggcgaccgcacc
accaacgacggcatcgtggccgcgtgcgacgagatcacgcgcgaggatccgcgcggcgac
gtgctgatcttcctgcccggcgagcgcgagatccgcgacgcgcacctgtcgctggaacgt
cgcaaataccgcgaaaccgaagtgcttccgctgtacgcgcgcctgtcggtgcgcgaccag
gaccgcgtgttcaatcccggcccgaaacgccgcatcgtgctggcgacgaacgtcgccgaa
acctcgctgacggtgccgcgcatccgctacgtcgtcgatccgggcctggcgcgcgtgaag
cgttacagcccgcgcggcaagctcgatcgcctgcacatcgagccggtgagccaggccagc
gccgaccagcgcaagggccgttgcggacgcatcagcgaaggcacgtgctatcgcctgtat
tccgaagccgatttcgaatcgcggccgcgctacaccgatccggaaatccgccgcgccgcg
ctggccggcgtgatcctgcgcatgctgtcgctcgggctgggacgcatcgaggagttcccg
ttcctcgaaccgcccgatccgcgcgcgatcgccgacggctggcagcagctcgccgaactc
ggcgcggtggacgaacagcgtcgcctgacgccgatcggcaaactcatgtcgcgcctgccg
gtagacgtgaagctcgcgcgcatgctcgtcgctgcgaacgagcacggcgtgctgcgcgag
atgctcgtcatcgcgtcgttcctcgggatccaggatccgcgcgagcgtcccgcagaccag
cgcgccgcggccgacaatgcgcacgcgcagttcgccgatccgaagtcggagttcgtcggc
atcatcaagttgtggaacgcctacaacaccgcgcacgaggaactgacgcagtcgaagctg
cgcggctggtgcgagaagaacttcctcggcttcctgcgcatgcgcgagtggcgcgagctg
catcgccagctcaagctgatggccgaagaactccagtggaaggaatcgcgcgcggcgctc
aacgagcatggcgcgctggatcagtccgcgtacgccacgctgcacaaggcgctgctcgcc
ggcttgccgacgcagatcggcacgcgcagcgacaagggcttcgacggaccgcgcggccgc
aaattccagctgttccccggctcgccgttggcgaagaaaccaccgccgtgggtgctgtcg
gcgacgctgctcgacaccgaacgcgtctgggcgctgaccaacgccgcgatcgaaccggac
tgggcgatcgccgaactgtcgcatctgctgtcacggcgccagcacgatccacgctggtcg
cgttcgcagggccgcgtgatcggcagcgagcagatcagcctgttcgggctggtgctcgcg
cccaagcgccccgtgcactatggcgcgctgtttcccgaggaaagccggacgatcttcgcg
cgcgatgcgttggtgacgggcgagatcaacacgcgcagccagttcctgccgcgcaacctc
gccacgctcgcgaaggcgcgcgacgaggaagccaagcagcgtcgcagcggcctggtcgtc
gacgaggaatggatggcgcagtggtacctcgaccgcctgcctgcgcacgtgcacaacgcg
caggcgctggacgcgtggtacgccaagctgccgcagcccgagaaggccgcgctggaatgg
tcgctgtccgacctgatgatcggcgacgaaagcgacgcggtgcgcttcccgccgtatctc
gcgctgggcaacgtgcgactggaagtgaaataccgcttcgagccgggtgcgaccgacgac
ggcatgacgctcgccgttccgctgcacctgctcaacgcgctggatgcggtgcgcctgacc
tggcttgcgccgggcttcgtgcaggacaaggcggcggccctgatcaagacgctgcccaag
acgcttcgccgcaacttcgtgccggcaccggacttcgcgcgcgcgttccatgaagcgcac
cagcagccgtccgcggacacgatcaccggcgagcttgcgcgtttcctgcaccggctcggc
ggcgtggcggtggccgggaccgacttcgacgaatccgcgctcgaaccgcacctgcgcatg
aacctgcggttgttcgatcgcgacggcaagaccgtgctggccgaatcgcgcgacctggac
gacctgcgcgcgcgcttcggcgagcgcgcggcagcggcgttcgcggcgaaggcggccgac
ggactggcgcagcgtggactgacgacgtttcccgatgcaccgatccccgcgtcggtgccc
ggcgcgggcggcgtgcctgcgtaccctgcattgcacgacgatggcgacagcgcatcgctg
cgcgtgcacgccgaacgcgacgtcgcgctgcgcgaacacccgcgcggcgtgcgccgcctg
ctggcgatcgcgttggccgacaagctcaagcaggcgcgcaaacaactgcccgtgacgccg
aagatggggttgctctacgcctcgatcgaagccgccgcgccgcgcgtggacggcttgaag
gaaggcgatcgcctgcgcgcggacctggtcgatggtgcattcgcatcgatgacggacgac
gctgcagtcggcgatgtccgcgatgccgcgaccttcgccgcgcgccgcgacgccatcggc
aagcaggtcttcggcgatgcgatggaacggctccggcaggccgagacgatcctcgcggcc
gttgccgaagcgcgcgccaagctcgaatcgccgctgatgggctgggcgagcggcaacctc
gacgacatgcgcgcgcatcttgcgacgctgacgccgccgggtttcctgcgtagcgttccg
gccgacgcgttgcgcgagtacccgcgttacctgaaggcgctggccttgcgtggcgaacgc
gcgctgcgcgatccggtacgcgatcaggcgcgcatgctggaactcaagccgttcgccgat
gcgctggccgatgccgtgcgaagcggcgaggccgatgcgtccgactggcaggcgctgcgc
tgggatctggaagaactgcgcgtgtcgctgttcgcgcaggagctgggcacgcgtggcggc
gtatcgccgaagaaactggcgcagcggctcgcgcagctgcgccgctga
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