Lysobacter soli: GOY17_05410
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Entry
GOY17_05410 CDS
T06337
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
lsol
Lysobacter soli
Pathway
lsol03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lsol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GOY17_05410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsol03000
]
GOY17_05410
03400 DNA repair and recombination proteins [BR:
lsol03400
]
GOY17_05410
Enzymes [BR:
lsol01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
GOY17_05410
Transcription factors [BR:
lsol03000
]
Prokaryotic type
Helix-turn-helix
AraC family
GOY17_05410
DNA repair and recombination proteins [BR:
lsol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GOY17_05410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
QGW64403
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All DBs
Position
complement(1162697..1164280)
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AA seq
527 aa
AA seq
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MSEPAHIHADTLPAFHVCEQARRTRDPRFDGLFFTAVLSTRIYCRPVCPAVTARRVVYFR
HAAAAEAAGYRPCLRCRPELSPDDGSWRRGDAAIARALKLIDDGALAEQPLAALAERVGI
GERQLRRLFVERVGVAPMGVHGTRRLLFAKQLLTETDLPITQIALASGFASLRRFNDAFR
TAYRMAPRDLRKGRSEAREAGDVLTLRLGYRPPYDFMAMLDFLRGRALPGVEFVDDASYA
RVIGPVDRPGWLRVSAWPDDRNAGAHALKLELHGAASSKLLDIVQRLRRMFDLDADPQAI
ADTLSKDARFKPLLAQRPGLRLPSGWDGFEIAVRAIIGQQVSVAAARTLASRLAQKYGQP
LPQPFADARVADALAHLFPTPEKLVDADLESIGLIRSRAQTVRGVAQALLDGRVDFRPER
TLDDFVSRWVALPGIGPWTAQYIALRALGHPDAFPVEDLVLQKALPADGTRMAPKALAAR
AEAWRPWRGYAVIHLWRDSMPVPVAKAAKPTRARRGIARTTGADATA
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagcccgcccacatccacgccgacaccctgcccgccttccatgtgtgcgagcag
gcccgtcgcacgcgcgatccgcgcttcgacggcctgttcttcacggcggtgttgagcacg
cgcatctactgccgcccggtgtgcccggcggtgacggccaggcgcgtggtgtatttccgc
cacgccgcggcggccgaagcggcgggctaccggccgtgcctgcgctgccggccggagctg
tcgcccgacgacggcagctggcggcgcggcgacgcggccatcgcgcgcgcgttgaagctg
atcgacgacggtgcgctcgccgagcagccgttggcagcgctggccgagcgcgtcggcatc
ggcgaacgccagctgcgccgcctcttcgtcgaacgcgtgggcgtcgcgccgatgggcgtg
cacggcacgcgccggttgctgttcgcaaaacagttgctgaccgaaaccgacctgccgatc
acccagatcgcgctcgcatcgggcttcgccagtcttcgccgtttcaacgatgcattccgc
acggcgtatcgcatggcgccacgcgaccttcgcaaggggcgaagcgaggcgcgcgaggcc
ggcgacgtgctcacgctgcgactgggctatcgcccgccgtacgacttcatggcgatgctc
gatttcctgcgcggtcgcgccctgcccggcgtcgagttcgtcgacgatgcgagctacgca
cgcgtgatcggccccgtcgatcgccccggctggttgcgcgtcagcgcatggccggacgac
aggaacgccggcgcgcacgcgctgaagctcgaactgcacggcgccgcctcgtcgaagctg
ctggacatcgtgcagcgcctgcgccgcatgttcgacctggacgccgatccgcaggcgatc
gcggacacgttgtcgaaggacgcgcgcttcaagcccttgctcgcgcaacgccccggcctg
cgcctgcccagcggatgggacggcttcgagatcgcggtgcgcgcgatcatcggccagcag
gtgagcgtcgccgctgcacgcaccctcgcctcgcgcctggcgcagaagtacggacagccg
ctgccgcagccgttcgcggacgcgcgggttgcggacgcgctcgcgcatctgttcccgacg
cctgaaaaacttgtcgatgcagacctggaatccatcggcctgatccgctcgcgtgcgcag
accgtgcgtggcgttgcacaggcgctgctcgatggtcgcgtggatttccggccggaacgc
acgctggacgacttcgtgtcgcgctgggtcgcgttgcccggcatcgggccgtggacggcg
cagtacatcgcgctgcgcgcgctcgggcatcccgatgcgtttcccgtcgaagatttggta
ttgcagaaggcgcttcccgccgacggcacgcgcatggcgccgaaagcgcttgccgcgcgc
gccgaagcgtggcgaccgtggcgcggctatgcggtgatccacctgtggcgcgattcgatg
ccggtgcccgtcgcgaaggccgcgaagccgacgcgcgccaggcgcggaatcgcgcgcaca
accggcgcggacgccaccgcatga
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