Lysobacter soli: GOY17_06010
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Entry
GOY17_06010 CDS
T06337
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lsol
Lysobacter soli
Pathway
lsol03030
DNA replication
lsol03430
Mismatch repair
lsol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GOY17_06010 (dnaE)
03430 Mismatch repair
GOY17_06010 (dnaE)
03440 Homologous recombination
GOY17_06010 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsol03032
]
GOY17_06010 (dnaE)
03400 DNA repair and recombination proteins [BR:
lsol03400
]
GOY17_06010 (dnaE)
Enzymes [BR:
lsol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GOY17_06010 (dnaE)
DNA replication proteins [BR:
lsol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GOY17_06010 (dnaE)
DNA repair and recombination proteins [BR:
lsol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GOY17_06010 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QGW64514
LinkDB
All DBs
Position
complement(1298258..1301836)
Genome browser
AA seq
1192 aa
AA seq
DB search
MPAVPFVHLHLHSEYSLADSTIRIGELVKRCVALSQPAVALTDLDNLFAAVKFYKAAEGA
GLKPIIGADVGLADGNEIASRMTLLCRDRAGYLTLSRLLTRAWMEGHRTDGVALRPEWLR
EDNGGLFALAGRQSLAGRLATSNRHELAEAWLMDWRGVFGERLHLELTRTGREGEDAFNA
FALHASSKRSLPVIASNDVRFLDAEGFDAHEARVCIASGRVLDDPKRPKDYSAEQFLKSS
EEMQALFSDVPDAIDNAFALATRCNVEMKLGEYALPAFPVPSEHTIESWLRGTAREGLDK
RLQKNPLAPGKTREDYEARLDVELDVIIKMGFPGYFLIVADFINWAKDHDIPVGPGRGSG
AGSLVAWALGITDLDPLPYDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRD
RVSQIITYGTMAAKAVVRDTGRVLGHPYGFVDGIAKLIPNTLGIGLDDAMGESEASKQDP
TLASSDLIQRYHAEEDVRDLMDLARSLEDLTRNAGKHAGGVVIAPSPLSDFCPLFAEHDG
EGRGRNPVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINKRLADAAAKGIDAGPAM
HYTFKDAPTPQFDITSLPLDDKLSYELFARGDTVAVFQFESRGMRELLKRARPDTFEDII
ALAALFRPGPLGSGMDREWVDRKHGNTEVTYPHESLEPVLSPTYGVIVYQEQVMQIAQVL
AGYTLGGADMLRRAMGKKKPEEMAKERAKFEAGCAERGIPPKTATPIFDLMEKFAEYGFN
KSHSAAYALVAYQTAWLKVHYPAEFMAAVLSSDMDNTEKVTSFLDECRVMGLTVLPPDVD
ASAYMFEAKDATTIRYGLGAVKGVGRGACEAIVEARRAGEFADLLDFCKRVDSGKLNRRA
LEALTYAGALDKLGKNRASLMLQLPEVLKATDQLAKEREAGQVSLFGGFETAAPALHLDL
PETDEWPLTQILHGERETLGHYLSGHPFDPYRDEVRGLIGNDLSGLEKIWENRPEQRGSW
RQEVETIVAGLVVGLRKKGDSQMFVQIEDGRGRLECAFFNESYSEFAQLLVRDRLLVIQG
GLREDSFSGGFALRASRCWSFEQICEKHAQRLMLRLDLREPGTMQRVDALLSSFRPGSTP
IRMDLLVRRGAAGSLDLNGTQSIRADAELAARLRATPGVRAVKLALSKPWAN
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcagtccctttcgtccatctccatctccacagcgaatactcgctcgccgactcg
acgatccggatcggcgagctggtcaagcgctgcgtcgcgctttcgcagcctgcggtcgcg
ctgacggacctcgacaacctcttcgccgcggtcaagttctacaaggccgccgaaggtgcg
ggcctgaagccgatcatcggcgccgacgtcggcctggccgacggcaacgagatcgcctcg
cgcatgacgttgctgtgccgcgaccgcgccggctacctcacgctctcgcgcctgctgacg
cgcgcgtggatggaaggccatcgcaccgacggcgtcgcgcttcgccccgaatggctgcgc
gaggacaacggcggcctgttcgccctcgccggccgccagagcctcgccggtcggcttgcg
acgagcaaccgccacgaactcgccgaagcctggctgatggactggcgcggcgtgttcggc
gagcggctgcacctggaactcacccgcaccgggcgtgaaggcgaggacgcgttcaacgcc
ttcgcgctgcacgcgtccagcaagcgttcgctgccggtgatcgccagcaacgacgtgcgc
ttcctcgatgccgaaggcttcgacgcgcacgaagcgcgcgtgtgcatcgcctcgggccgc
gtgctggacgatcccaagcgcccgaaggactacagcgccgagcagttcctgaaatcgtcg
gaggagatgcaggcgctgttctccgacgtccccgatgcgatcgacaacgcgttcgcgctc
gccacgcgctgcaacgtcgagatgaagctcggcgagtacgcgctgccggccttcccggtg
ccgagcgaacacaccatcgaaagctggctgcgcggcaccgcgcgggagggcctggacaag
cggctgcagaagaatccgctcgcgccgggcaagacgcgtgaggactacgaagcgcgcctg
gacgtcgagctggacgtcatcatcaagatggggttccccggctacttcctgatcgtggcg
gacttcatcaactgggcgaaggaccacgacattcccgtcggcccgggccgcggttcgggt
gccggttcgctcgtcgcgtgggcgctgggcatcaccgacctggacccgctgccgtacgac
ctgctgttcgagcggttcctcaaccccgaacgcgtgtcgatgcccgacttcgacatcgac
ttctgcatggaccgtcgcgacgaggtcatcgactacgtcgcgcgcaagtacgggcgcgac
cgcgtctcgcagatcatcacctacggcaccatggccgcgaaggccgtggtgcgcgacacc
ggccgcgtgctcggccatccgtacggcttcgtcgacggcatcgcgaagctcattccgaac
acgctcggcatcggcctggacgatgcgatgggcgagtcggaggcgtcgaagcaggatccg
acgctcgcctcgtccgacctcatccagcgttaccacgccgaagaagacgtgcgcgacctg
atggacctggcgcgcagcctggaagacctcacgcgcaacgccggcaagcacgccggcggc
gtggtgatcgcgccgagcccgttgtccgacttctgcccgctgttcgccgaacacgacggc
gagggccgcgggcgcaatccggtcacgcagttcgacaaggacgacgtcgaagcggtcggc
ctggtgaagttcgacttcctcggcctgcgtacgctgacgatcatcgactgggcggtgaag
gcgatcaacaagcgcctggccgacgccgcggccaagggcatcgatgccggcccggcgatg
cactacacgttcaaggacgcgcccacgccgcagttcgacatcacgtcgctgccgctggac
gacaagctcagctacgagctgttcgcacgtggcgacacggtggcggtgttccagttcgaa
tcccgcggcatgcgcgagctgctcaagcgcgccaggcccgacacgttcgaagacatcatc
gcgctcgccgcgctgttccgtcccggcccgctgggctcggggatggatcgcgaatgggtc
gatcgcaagcacgggaacaccgaggtcacctacccgcacgaatcgctggagccggtgctg
tcgccgacctacggcgtcatcgtgtaccaggaacaggtgatgcagatcgcgcaggtgctg
gcgggctacacgctcggcggcgccgacatgctgcgtcgcgcgatgggcaagaagaagccc
gaggagatggcgaaggaacgcgccaagttcgaagccggttgcgccgagcgcggcatcccg
ccgaagaccgccacgccgatcttcgacctgatggagaagttcgccgagtacggcttcaac
aagtcgcactcggcggcgtacgcgctggtggcctaccagaccgcgtggctgaaggtgcac
tacccggccgaattcatggccgcggtgctctcctcggacatggacaacaccgagaaggtc
accagcttcctcgacgaatgccgcgtgatgggcctgacggtgctgccgcccgacgtggac
gcgtcggcgtacatgttcgaggcgaaggacgccaccacgatccgctacggcctgggcgcg
gtgaagggcgtcggccgcggcgcgtgcgaggcgatcgtcgaagcacgtcgtgcgggcgag
ttcgccgacctgctggatttctgcaagcgcgtggacagcggcaagctcaaccgccgcgcg
ctcgaagcgctgacgtacgccggcgcgctcgacaagctcggcaagaaccgcgcgagcctc
atgctgcagttgccggaagtgctcaaggccaccgaccagctggcgaaggagcgcgaagcc
ggccaggtatcgttgttcggcggcttcgaaacggcggcgccggcgctgcatctggacctg
cccgaaaccgacgagtggccgctgacgcagatcctgcacggcgagcgcgaaacgctcggg
cattacctcagtggccatccgttcgatccgtatcgcgacgaggttcgtggcctgatcggc
aacgacctcagcggcctggagaagatctgggaaaaccgccccgaacaacgcggcagctgg
cgccaggaagtcgagacgatcgtcgccggcctcgtcgtcggcctgcgcaagaagggcgac
agccagatgttcgtgcagatcgaggacggtcgcggccgcctggaatgcgcgttcttcaac
gagagctacagcgagttcgcgcaattgctggtgcgcgaccgcctgctggtgatccagggc
ggcctgcgcgaggacagcttcagtggcggcttcgcgctgcgtgcctcgcgttgctggagt
ttcgagcagatctgcgagaagcacgcgcagcgcctgatgctgcgcctggacctgcgcgag
ccgggcacgatgcagcgcgtggacgcgctgctgtcgtcgttccgccccggttccaccccg
atccgcatggacctgctggtgagacgcggcgccgccggctcgctcgacctcaacggtacg
cagtcgatccgcgccgacgccgaactcgccgcacgcctgcgcgccacgccgggcgtacgc
gcggtgaagctcgcgctgtcgaagccctgggcgaattga
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