Lysobacter soli: GOY17_11560
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Entry
GOY17_11560 CDS
T06337
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lsol
Lysobacter soli
Pathway
lsol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lsol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GOY17_11560 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsol03400
]
GOY17_11560 (ligD)
Enzymes [BR:
lsol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GOY17_11560 (ligD)
DNA repair and recombination proteins [BR:
lsol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GOY17_11560 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QGW65495
UniProt:
A0A6I6GH24
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Position
2541509..2544082
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AA seq
857 aa
AA seq
DB search
MSLTEYRRKRQFTKTREPEPGKRLPQGRRAIFVVQLHHASRRHYDFRLQIGDALKSWAVP
KGPSYDPNVKRMAVEVEDHPVDYAEFEGEIPKGHYGGGHVAQFDHGVWATPYDPEEQLAK
GHLKFELFGDKLKGGWHLVRSGKPARQPQWLLFKDKDEYAGTLEADDLLADVTPPPEEDA
KRAGRGKAKRKRETEVPVQSATRHRDWAKLAMKLPGARKAAAPTEFFAPQLAKLGDAPPE
GDQWVHEIKWDGYRIVATVARGKAKLWSRNALDWTDKVPEITGAIEALGLKSAALDGELI
AGSGTRDDFNLLQATLSGERQGTLSYALFDLLHVDGVDISKAPLIERKTLLEQILGHGTR
HLSYSSHAVGDGEQAFELAGQQDFEGIISKRADRAYHSGRGDDWRKTKALHSDEYAVVGW
TAPKGSRSGFGSLLLATPDKRHGWAYVGRVGSGFSDTLIKDISKRLGRAGSKEPTVYVPE
NDTDLRSAKWFEPRFVVEVNFRGIGGQGLLRQPSLKSIRDDKDIEDLSDSDRGSGTKPAK
AAAKKIASKTSASKTATKKAAKSATKTARTPPKLSSPTKVLYPDDGYTKLDVANYYAAVR
DHLLPEIAGRPLSIIRCPAGTDKPCFFQKHHTPGLELVEFVRLKEEAGNNANYLVVNDEA
ALMELVQFNALEFHPWGSHADDPDRADRIVFDLDPGPDVPFDEVKRAAVDVRKRLIELEL
ESFLRTTGGKGLHVVVPLNPGCDWSLVKPFAQSFAEVMSQAEPDRFLSVSTKRLRNKRIF
VDYLRNGRGATAVASYSLRARPRAPVSMPLAWSELPKLKRGDAFTIADVPARLKRRRKDP
WSGIEKIKQNLSKFSAE
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgacggaataccgccgcaagcggcagttcaccaagacccgcgaacccgagccc
ggcaagcgcctgccgcagggccgacgtgcgatcttcgtcgtccagctgcatcacgccagc
cgccgccactacgacttccgcctgcagatcggcgacgcgctgaaaagctgggcggtgccg
aagggaccgagctacgacccgaacgtcaagcgcatggcggtcgaagtcgaggaccatccg
gtcgattacgccgagttcgaaggcgaaattccgaagggccattacggcggcggccatgtc
gcgcagttcgaccacggcgtgtgggcgacgccttacgacccggaagaacagcttgccaag
ggccacctgaagttcgaactgttcggcgacaagctcaagggcggctggcacctggtgcgc
tcgggaaaaccggcgcgtcagccgcaatggctgctgttcaaggacaaggacgaatacgcc
ggcacgctggaagccgacgacctgctcgccgacgtcacgccgccgccggaggaagacgcc
aagcgcgccggacggggcaaggccaaacgcaagcgcgaaaccgaagtgccggtgcagagc
gcgacgcggcatcgcgactgggcgaagctggcgatgaagttgcccggcgcacgcaaggcc
gccgcgccgacggagttcttcgcgccgcagctggccaagctcggcgacgcgccacccgaa
ggcgaccagtgggtgcacgagatcaagtgggacggttatcgcatcgtcgccaccgtcgcg
cgaggcaaggccaagctctggtcgcgcaatgcgctggactggaccgacaaggtgcccgag
atcaccggcgcgatcgaagcgctgggcctgaaatcggccgcgctcgacggcgaactcatc
gccggctccggcacgcgcgacgacttcaacctgctgcaggcgacgctgtccggtgaacgc
cagggcacgttgtcgtatgcgttgttcgacctgctgcacgtcgatggcgtggacatcagc
aaggcgccgctgatcgaacgcaagacgctgctggagcagatcctcggccacggcacgcgc
cacctgtcgtacagctcgcacgcggtgggcgacggcgagcaggcgttcgaactggccggc
cagcaggatttcgaaggcatcatctccaagcgtgccgaccgcgcctaccactccggacgc
ggcgacgactggcgaaagaccaaggcgctgcacagcgacgaatatgccgtcgtcggatgg
accgcgccgaagggcagccgcagcggtttcgggtcgctgctgctcgccacgcccgacaag
cgccacggctgggcctacgtcggccgcgtgggcagcgggttttccgacacgctgatcaag
gacatcagcaagcgcctcggccgcgcgggttcgaaggaaccgaccgtgtacgtgccggag
aacgacaccgacctgcgcagcgcgaagtggttcgaaccgcgcttcgtggtggaagtgaac
ttccgcggcatcggcggacagggccttctgcggcagccgtcgctcaaatccattcgcgac
gacaaggacatcgaggacttgtccgacagcgatcgcggttcgggtacgaagccggccaag
gccgcagcgaagaagatcgcatcgaagacgagcgcatcgaagacggcaacgaagaaggcc
gcgaagtcggcgacgaaaaccgcgcgcacgccgccgaaactcagtagcccgacgaaggtg
ctgtatcccgacgacggctacaccaagctcgatgtcgccaactactacgccgcggttcgc
gaccacctgctgccggagatcgccggccgcccgctgtcgatcatccgctgccccgcgggc
accgacaaaccctgctttttccagaaacaccacacgcccgggctcgagctggtcgaattc
gtgcgcctgaaggaagaagccggcaacaacgccaactacctcgtggtgaacgacgaagcc
gcgttgatggaactggtgcagttcaacgcgctggaattccacccgtggggctcgcacgcg
gacgatcccgatcgcgccgaccgcatcgtcttcgacctcgaccccggccccgacgtgccg
ttcgacgaagtcaaacgcgccgccgtggacgtgcgcaagcggctcatcgaactcgaactg
gaatccttcctgcgcaccaccggcggcaagggcctgcacgtggtggtgccgctgaatccc
ggctgcgactggagcctggtgaagccgttcgcgcagagcttcgccgaagtgatgtcgcag
gccgaacccgaccgcttcctgtcggtgtcgaccaagcgtcttcgcaacaagcgcatcttc
gtcgactacctgcgaaacgggcgcggcgccacggccgtcgcgtcgtattcgctgcgtgcc
cggccacgtgcaccggtgtcgatgcccctggcgtggagcgagttgcccaagctcaagcgt
ggcgacgcgttcaccatcgccgacgtgcccgcgcgcctgaagcgacgtcgcaaggatccg
tggtcggggatcgagaagatcaagcagaacctgtcgaagttttcggcggagtag
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