KEGG   Lysobacter soli: GOY17_11560
Entry
GOY17_11560       CDS       T06337                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lsol  Lysobacter soli
Pathway
lsol03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lsol00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GOY17_11560 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lsol03400]
    GOY17_11560 (ligD)
Enzymes [BR:lsol01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GOY17_11560 (ligD)
DNA repair and recombination proteins [BR:lsol03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GOY17_11560 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C
Other DBs
NCBI-ProteinID: QGW65495
UniProt: A0A6I6GH24
LinkDB
Position
2541509..2544082
AA seq 857 aa
MSLTEYRRKRQFTKTREPEPGKRLPQGRRAIFVVQLHHASRRHYDFRLQIGDALKSWAVP
KGPSYDPNVKRMAVEVEDHPVDYAEFEGEIPKGHYGGGHVAQFDHGVWATPYDPEEQLAK
GHLKFELFGDKLKGGWHLVRSGKPARQPQWLLFKDKDEYAGTLEADDLLADVTPPPEEDA
KRAGRGKAKRKRETEVPVQSATRHRDWAKLAMKLPGARKAAAPTEFFAPQLAKLGDAPPE
GDQWVHEIKWDGYRIVATVARGKAKLWSRNALDWTDKVPEITGAIEALGLKSAALDGELI
AGSGTRDDFNLLQATLSGERQGTLSYALFDLLHVDGVDISKAPLIERKTLLEQILGHGTR
HLSYSSHAVGDGEQAFELAGQQDFEGIISKRADRAYHSGRGDDWRKTKALHSDEYAVVGW
TAPKGSRSGFGSLLLATPDKRHGWAYVGRVGSGFSDTLIKDISKRLGRAGSKEPTVYVPE
NDTDLRSAKWFEPRFVVEVNFRGIGGQGLLRQPSLKSIRDDKDIEDLSDSDRGSGTKPAK
AAAKKIASKTSASKTATKKAAKSATKTARTPPKLSSPTKVLYPDDGYTKLDVANYYAAVR
DHLLPEIAGRPLSIIRCPAGTDKPCFFQKHHTPGLELVEFVRLKEEAGNNANYLVVNDEA
ALMELVQFNALEFHPWGSHADDPDRADRIVFDLDPGPDVPFDEVKRAAVDVRKRLIELEL
ESFLRTTGGKGLHVVVPLNPGCDWSLVKPFAQSFAEVMSQAEPDRFLSVSTKRLRNKRIF
VDYLRNGRGATAVASYSLRARPRAPVSMPLAWSELPKLKRGDAFTIADVPARLKRRRKDP
WSGIEKIKQNLSKFSAE
NT seq 2574 nt   +upstreamnt  +downstreamnt
atgagcctgacggaataccgccgcaagcggcagttcaccaagacccgcgaacccgagccc
ggcaagcgcctgccgcagggccgacgtgcgatcttcgtcgtccagctgcatcacgccagc
cgccgccactacgacttccgcctgcagatcggcgacgcgctgaaaagctgggcggtgccg
aagggaccgagctacgacccgaacgtcaagcgcatggcggtcgaagtcgaggaccatccg
gtcgattacgccgagttcgaaggcgaaattccgaagggccattacggcggcggccatgtc
gcgcagttcgaccacggcgtgtgggcgacgccttacgacccggaagaacagcttgccaag
ggccacctgaagttcgaactgttcggcgacaagctcaagggcggctggcacctggtgcgc
tcgggaaaaccggcgcgtcagccgcaatggctgctgttcaaggacaaggacgaatacgcc
ggcacgctggaagccgacgacctgctcgccgacgtcacgccgccgccggaggaagacgcc
aagcgcgccggacggggcaaggccaaacgcaagcgcgaaaccgaagtgccggtgcagagc
gcgacgcggcatcgcgactgggcgaagctggcgatgaagttgcccggcgcacgcaaggcc
gccgcgccgacggagttcttcgcgccgcagctggccaagctcggcgacgcgccacccgaa
ggcgaccagtgggtgcacgagatcaagtgggacggttatcgcatcgtcgccaccgtcgcg
cgaggcaaggccaagctctggtcgcgcaatgcgctggactggaccgacaaggtgcccgag
atcaccggcgcgatcgaagcgctgggcctgaaatcggccgcgctcgacggcgaactcatc
gccggctccggcacgcgcgacgacttcaacctgctgcaggcgacgctgtccggtgaacgc
cagggcacgttgtcgtatgcgttgttcgacctgctgcacgtcgatggcgtggacatcagc
aaggcgccgctgatcgaacgcaagacgctgctggagcagatcctcggccacggcacgcgc
cacctgtcgtacagctcgcacgcggtgggcgacggcgagcaggcgttcgaactggccggc
cagcaggatttcgaaggcatcatctccaagcgtgccgaccgcgcctaccactccggacgc
ggcgacgactggcgaaagaccaaggcgctgcacagcgacgaatatgccgtcgtcggatgg
accgcgccgaagggcagccgcagcggtttcgggtcgctgctgctcgccacgcccgacaag
cgccacggctgggcctacgtcggccgcgtgggcagcgggttttccgacacgctgatcaag
gacatcagcaagcgcctcggccgcgcgggttcgaaggaaccgaccgtgtacgtgccggag
aacgacaccgacctgcgcagcgcgaagtggttcgaaccgcgcttcgtggtggaagtgaac
ttccgcggcatcggcggacagggccttctgcggcagccgtcgctcaaatccattcgcgac
gacaaggacatcgaggacttgtccgacagcgatcgcggttcgggtacgaagccggccaag
gccgcagcgaagaagatcgcatcgaagacgagcgcatcgaagacggcaacgaagaaggcc
gcgaagtcggcgacgaaaaccgcgcgcacgccgccgaaactcagtagcccgacgaaggtg
ctgtatcccgacgacggctacaccaagctcgatgtcgccaactactacgccgcggttcgc
gaccacctgctgccggagatcgccggccgcccgctgtcgatcatccgctgccccgcgggc
accgacaaaccctgctttttccagaaacaccacacgcccgggctcgagctggtcgaattc
gtgcgcctgaaggaagaagccggcaacaacgccaactacctcgtggtgaacgacgaagcc
gcgttgatggaactggtgcagttcaacgcgctggaattccacccgtggggctcgcacgcg
gacgatcccgatcgcgccgaccgcatcgtcttcgacctcgaccccggccccgacgtgccg
ttcgacgaagtcaaacgcgccgccgtggacgtgcgcaagcggctcatcgaactcgaactg
gaatccttcctgcgcaccaccggcggcaagggcctgcacgtggtggtgccgctgaatccc
ggctgcgactggagcctggtgaagccgttcgcgcagagcttcgccgaagtgatgtcgcag
gccgaacccgaccgcttcctgtcggtgtcgaccaagcgtcttcgcaacaagcgcatcttc
gtcgactacctgcgaaacgggcgcggcgccacggccgtcgcgtcgtattcgctgcgtgcc
cggccacgtgcaccggtgtcgatgcccctggcgtggagcgagttgcccaagctcaagcgt
ggcgacgcgttcaccatcgccgacgtgcccgcgcgcctgaagcgacgtcgcaaggatccg
tggtcggggatcgagaagatcaagcagaacctgtcgaagttttcggcggagtag

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