Lysobacter soli: GOY17_12305
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Entry
GOY17_12305 CDS
T06337
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lsol
Lysobacter soli
Brite
KEGG Orthology (KO) [BR:
lsol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lsol03016
]
GOY17_12305 (rnd)
Enzymes [BR:
lsol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GOY17_12305 (rnd)
Transfer RNA biogenesis [BR:
lsol03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GOY17_12305 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QGW65627
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All DBs
Position
2706117..2707217
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AA seq
366 aa
AA seq
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MPVAWITDPAALRARFASKPARIGLDTEFIRERTYWPQLALVQIAIGDADGEPDILLIDP
LVPGMLEALTPILADESIVKVMHSPSEDLVAFKHACKVVPKPLFDTQLAAALAGVGGGLG
YQKLVEQLTGIALAKGETRSDWLRRPLSPSQLEYAADDVRHLFEMHDQLDRKLGELDRRE
WLAEDAARTAQNAENEAPERWPHATMRSAQFLDRAAQLRLLRLLRWRDVYARDNDRPRSW
ILDNELAVTLARTPPIDRAGLQRTLDAIPKSPRRLADALWSALTTPLPDEEDAPDAVQSE
QRDKQRLRKLQDAVAARSAELGLPDGVLASRRWLEVLMDQGEWPEALAGWRRRALEPGLA
PLLQAS
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcgcctggatcaccgaccccgccgcattgcgggcccgcttcgcatcgaagccc
gcgcgcatcggcctggacaccgaattcatccgcgaacgcacctactggccgcaactggcg
ctggtgcagatcgcgatcggcgatgccgacggcgagccggacatcctgctgatcgatccg
ctcgtgcccggcatgctggaggcgttgacgccgatcctcgccgacgagtcgatcgtcaag
gtcatgcacagcccgagcgaagatctcgtcgccttcaagcacgcctgcaaggtcgtgccc
aaaccgctgttcgacacgcagctggcggcagcgctcgcgggcgtcggcggcggcctgggt
taccagaagctggtcgaacagctcaccggcatcgcccttgccaaaggcgagacgcgttcg
gactggctgcgtcgtccgctctcgccgtcgcagctggaatacgccgccgacgacgtgcgc
cacctgttcgaaatgcacgaccagctcgaccgcaaactcggcgagctcgatcgccgcgaa
tggctggccgaagacgccgcgcgcaccgcgcagaacgccgagaacgaagcgcccgagcgc
tggccgcacgcgacgatgcgcagcgcgcagttcctcgatcgcgccgcgcagctgcgcctg
ttgcggctgctgcgctggcgcgacgtttacgcgcgcgacaacgatcgcccgcgcagctgg
atcctcgacaacgaactggccgtcacgctcgcgcgtacgccgccgatcgatcgcgccggg
ctgcagcgcacgctcgatgcgattccgaaatcgccgcgccgcctcgccgacgcgctttgg
tcggcgctgaccacgccgctgcccgacgaggaagacgcgcccgacgccgtgcagtccgag
cagcgcgacaagcagcgcctgcgcaagctgcaggacgccgtcgccgcgcgcagtgccgag
ctgggcctgcccgacggcgtgctcgcctcgcgtcgctggctcgaagtgctgatggaccag
ggcgagtggcccgaagcgctcgccggctggcgacgccgcgcgctcgagccgggactggcc
ccgctgctgcaggcgtcctga
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