Lysobacter soli: GOY17_17080
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Entry
GOY17_17080 CDS
T06337
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lsol
Lysobacter soli
Brite
KEGG Orthology (KO) [BR:
lsol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lsol03016
]
GOY17_17080
Enzymes [BR:
lsol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GOY17_17080
Transfer RNA biogenesis [BR:
lsol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GOY17_17080
Prokaryotic type
tRNA splicing ligases
GOY17_17080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QGW66454
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All DBs
Position
3754440..3755666
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AA seq
408 aa
AA seq
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MNTQHASFDLLHAEGATTPIKGWTHGVPVEDQARQQLRNIATLPFVGPWVAVMPDVHLGI
GATVGSVVPTKGAIIPAAVGVDIGCGMAAVRTTLRADDLPDDLSLLRNSIERSVPVGNGP
GGEHRRIPDSVETALEKSNLVARLAKIRQKHPKIRPDKLDRQIGTLGGGNHFIEICLDEA
DRVWVMLHSGSRGTGNLIGTYFIELARRELEKRVLGFHVPDRDLAFFLEGEPLFDEYVEA
VSWAQDYARANREAMMARVLHEMRHRLPKFQTEKSAVNCHHNYVQREDHFGESLLVTRKG
AVSAREGELGIIPGSMGARSFIVRGKGNADSFHSCSHGAGRVMSRTAARARITLKEHREA
TAHVECRKDAGVIDESPAAYKDIDAVMAAQRDLVEIVHTLRQVVCIKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgcaacacgcttcattcgacctgctgcacgccgaaggtgcgaccacgccgatc
aagggctggacgcacggcgtgccggtcgaggaccaggcgcggcagcagctgcgcaacatc
gccaccctgcccttcgtcgggccgtgggtcgcggtgatgcccgacgtgcacctgggcatc
ggcgcgacggtgggatcggtcgtgccgacgaagggcgcgatcatcccggccgcggtcggc
gtcgacatcggctgcggcatggccgcggttcgcaccacgctgcgcgccgacgacctgccg
gacgacctgtcgctgctgcgcaactccatcgagcgcagcgttccggtcggcaacggtccg
ggcggcgagcaccgccggattcccgacagcgtcgagacggcgctggagaagtccaacctc
gtcgcgcgactggcgaagatccgccagaagcatccgaagatccgcccggacaagctcgat
cgccagatcggcacgctcggcggcggcaaccacttcatcgagatctgcctcgacgaggcc
gatcgcgtttgggtgatgctgcactcgggctcgcgcggcaccggcaacctcatcggcacg
tacttcatcgaactggcgcgtcgcgagctggaaaagcgcgtgctcggtttccacgtgccc
gatcgcgacctcgcgttcttcctcgaaggcgagccgctgttcgacgagtacgtcgaagcg
gtctcgtgggcgcaggactacgcgcgtgcgaaccgcgaggcgatgatggcgcgcgtgctg
cacgagatgcgccaccgcctgccgaagttccagacggagaagtcggcggtgaactgccac
cacaactacgtgcagcgcgaggaccacttcggcgaatcgttgctcgtcacgcggaagggc
gccgtcagcgcgcgcgagggcgagctcggcatcatcccgggcagcatgggcgcacgcagt
ttcatcgtgcgcggcaagggaaacgcggacagcttccacagctgcagccacggcgccggc
cgcgtgatgagccgcaccgccgcacgcgcgcggatcacgctcaaggagcaccgcgaggcc
accgcgcacgtcgaatgtcgaaaggacgcaggcgtgatcgacgagtcgcccgccgcgtac
aaggacatcgatgcggtgatggcggcgcagcgcgacctggtggagatcgtgcatacgctg
cggcaggtggtttgtatcaaggggtga
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