Lysinibacillus sphaericus: Bsph_0075
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Entry
Bsph_0075 CDS
T00656
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lsp
Lysinibacillus sphaericus
Pathway
lsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bsph_0075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsp03400
]
Bsph_0075
Enzymes [BR:
lsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bsph_0075
DNA repair and recombination proteins [BR:
lsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bsph_0075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_16
Cas3-like_C_2
AAA_22
RecG_dom3_C
MFD_D3
ISP_coupler
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ACA37713
UniProt:
B1HSV9
LinkDB
All DBs
Position
77952..81461
Genome browser
AA seq
1169 aa
AA seq
DB search
MEVLRQLVSRDKHITSFLQDIQSGQTASQLITGLTGSARPVMVDALFEYVKKPIYIVSPN
LLQAQRMVDELAGLLGEENVHYYPADEFIAADLSVASPELRAERIATLDCLARGEKAVYV
IPVAGLRKIMQPKEHWLHYFLQTTVGDEIEVDAWLQTLVEMGYVRNSMVTTPGEFALRGG
ILDIYPPYLASPIRIELFDTEVDSIRTFSADDQRSINKLQKIRILPASEVILTKSERQTL
AERLEKALGASLKKVKRQETKELLYQHIQYDIELLQQGNLPDYVNKYGSLLYDKSAYLGD
YFAQDGIVLFDELGRIQEVMDAWEREEEEWFLSLIEEGKMVHDVKPAFTLKEIVAMLSQQ
KLSFSLFSRTFSGITFNKTTNFSCKPMQQFHGQMALLQSEIERWLLGKFTVLIVARDKER
VKRVQQMLEEYDIHAAIGEPTEPGIYIVDGALSSGFELPLQRMAIVTEDELFKQQAKKKA
RTQKMTNAERIKSYTEIKPGDYVVHVHHGIGKYIGVETLEVNGTHKDYLHIRYRADDKLY
VPVEQIDLIQKYVASEDREPKLHKLGGAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKG
HAFTPDNDDQRNFEAMFAYEETEDQLRSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIR
AAFKAIQDGKQVAFLVPTTILAQQHYETIRERFQDFAINVGLLSRFRSKKEQTATLKGLK
EGQVDIVIGTHRILSKDLIFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIP
RTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVE
DMARKVEEIQVLVPEARIGHAHGKMSETELESVILSFLEGDYDVLVTTTIIETGVDIPNV
NTLIVHDADRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQEAIAERQTGVKKEEKPEIEI
LLSVDAYIPDVYIPDGYQKIQMYKRIKAMDQVEEYGEIMEELEDRFGDLPIETERLLRVA
RMKVWGLGAGVISVKEKQKLITILLSEQGTANVDGSKIIEESMKFERAVGFGMDGMQLKL
TIDERKCGKYQPFDILEELMQIIDKAKKL
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
gtggaagttttacgacagcttgtgtcgcgggataaacatattacatcatttttacaggat
attcagagcggtcaaactgcatcgcagctgattacaggtttaactggaagcgcacgtccc
gtgatggtcgatgcgttatttgaatatgtaaagaagccgatttacattgtttctcctaat
ctactgcaggcgcaaagaatggtggatgagcttgctggactattaggtgaagaaaatgtt
cactattacccggctgacgaatttattgctgcagatctttccgtggcctctccagaatta
cgagcggaacgaatcgcaacgcttgattgcttagctagaggtgagaaggctgtttatgta
atccctgttgccggtttaagaaagatcatgcagccgaaggaacattggctacactatttt
ttacaaacaactgtgggcgatgaaattgaagtggatgcatggctacaaacattagttgaa
atgggctatgtacgtaattccatggtgactacacctggcgaatttgccttacgtggaggc
atacttgatatttatccaccgtatttagcatcacctattcgtattgaattatttgacaca
gaagtagattctataagaacattttcggcagatgatcaacgttctattaataaactacaa
aaaattcgtatacttcctgcctctgaggttattcttacaaaatcagaaagacagacattg
gcagaacgtttagaaaaagcgttaggggcaagcctaaagaaagttaaaaggcaggagacc
aaagaactcctttatcagcatattcagtatgatattgaattgctacaacaagggaatctt
ccagactatgtcaataaatatggatcattattatatgataaatcggcttatttaggcgac
tattttgcccaagatggaattgttctgtttgatgagcttggacgcatccaagaagttatg
gacgcttgggaacgtgaagaagaggaatggttcttatctttaattgaagaagggaaaatg
gttcatgatgttaaaccagccttcacattaaaggaaatagtggccatgctgtcgcaacaa
aagctttccttttcattattctcacgtacattttcgggaataacgtttaataagaccact
aacttttcttgcaagccaatgcaacaatttcacggtcaaatggccttgttacaaagtgag
attgaacgttggttacttgggaagtttacagtactcatcgtagctagagataaagagcgt
gtgaagcgtgttcagcaaatgctagaagagtatgatatccatgcggcgataggtgagcct
acagagcctggaatttatattgtcgatggagcattgtcaagtggtttcgaattaccactc
caacgtatggccattgtaacagaggatgagctatttaagcagcaggcaaagaaaaaagca
cgtacgcaaaaaatgacgaatgctgaacgtattaaaagctatacggaaattaaacctggt
gattatgttgttcacgttcaccacggaatagggaaatacattggtgtagaaacgttagag
gtaaatggaacacataaggattacttgcatattcgatatcgtgcagacgataaattatat
gtacctgtcgagcaaatagacttaatacaaaaatatgtggcatcagaggatcgtgaaccg
aagctacataaattaggtggcgcagagtggaaaaaagcgaaggccaaggtatcatctgct
gtacaggatattgcagatgatttaattaagctttatgcgaagcgggaagctgaaaaaggg
catgcttttacacctgataatgatgatcaacgtaacttcgaggcaatgttcgcctatgaa
gaaactgaggaccagctacgttctattgttgaagtaaaaagggatatggagcgtgagcgt
cctatggatcgcctagtttgtggtgacgtaggctatggtaaaacagaagtggctatccgt
gcagcatttaaagctattcaagatggcaaacaggttgccttccttgtccctacgaccatt
ttagcccagcagcattatgaaacaattcgtgaacgcttccaggattttgctattaatgtg
ggattgctatcacgcttcaggtctaagaaagagcaaacagctacattaaaagggctaaaa
gaagggcaagtcgatatagttattggaacacacagaatcttatcgaaggatttaatattc
caagaccttggtttgttaattgttgatgaagaacaacgttttggtgtaacgcataaagaa
aaaattaagcagttaaaaacaaatgtcgatgtgttaactttaacagcaacaccaattccg
agaacactccatatgtcaatggtaggcgtccgagatttgtctgttattgaaacaccacca
gccaatcgattcccagttcaaacatacgtgatggaacatagcggggcactagtacgagag
gcaatcgaaagagagatggcacgtggcggacaagtgttttacttatataatcgcgtagaa
gatatggctagaaaagttgaggaaattcaagtgcttgttccagaggcacgaataggtcat
gcacatgggaaaatgtcagagactgaattagagtcagtcatattatcctttttagaaggc
gattatgatgtacttgtaacaacgactattattgagactggtgtagatattcctaatgtc
aatactctaattgttcacgatgctgatcgaatgggcttagctcagctctatcaattgcgt
gggcgcgttgggcgttctaaccgggtagcctatgcctattttatgtaccagcgtgataaa
gtattgacagatgttgccgagcaaagattgcaggccattaaagaatttacggagttggga
tcaggctttaaaattgctatgcgagacttatctattcgaggagctgggaacttacttgga
gcccaacagcatggctttattgattcagttggttttgatttatattcacagatgcttcaa
gaggcaattgcagagcgtcaaacaggtgtgaaaaaagaagaaaaacctgagattgaaatt
ttattaagtgtcgatgcgtatattcctgatgtctatattcctgatggataccaaaaaatt
caaatgtataaacgtattaaagcaatggatcaggtggaagagtatggtgaaatcatggag
gaattagaagatcgatttggtgatcttccaattgaaacagagcgtttactacgtgtagca
cgaatgaaagtatggggattaggcgcgggagtcatctctgtaaaagagaagcagaagctt
ataactatattgttgtctgaacaggggacggcaaatgttgatggtagtaaaattattgaa
gaatccatgaaatttgaacgtgctgttggttttggtatggatggcatgcaattaaaacta
acgattgatgagcggaaatgcggaaaatatcaacccttcgacattttggaagaactgatg
caaattattgataaagcaaagaagctatag
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