Lysinibacillus sphaericus: Bsph_0480
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Entry
Bsph_0480 CDS
T00656
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lsp
Lysinibacillus sphaericus
Pathway
lsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bsph_0480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsp03019
]
Bsph_0480
03016 Transfer RNA biogenesis [BR:
lsp03016
]
Bsph_0480
Enzymes [BR:
lsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Bsph_0480
Messenger RNA biogenesis [BR:
lsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bsph_0480
Transfer RNA biogenesis [BR:
lsp03016
]
Prokaryotic type
tRNA degradation factors
Bsph_0480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
S1_RRP5
S1CSD-TOTE-2
AEP_C962R
Motif
Other DBs
NCBI-ProteinID:
ACA38105
UniProt:
B1HWE8
LinkDB
All DBs
Position
498373..500862
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AA seq
829 aa
AA seq
DB search
MKEGICMKDQKDTLQGRLLVFFGQDDYEPLTVGEIEDEFGFEDAEEFKELVKTLVRMEGQ
GLVVRSRSNRYGLPERMNLLRGKFIGHAKGFGFVAPDMEGMDDVFIPPHEINGAINGDIV
LIRVLKESFGDRREGTVTKVVERGQTSFVGTFQANRGFGFVVLDDKKLPMDIFIAKGDTL
GAVDGHKVVVEVATWPEDLKSATGYITKILGHKNDPGVDILSILYKHDIPPEFPDEVIAA
AQRVPDDITEADLVGRRDLRHETIVTIDGADAKDLDDAVTVTKNVDGTYKLGVHIADVSY
YVTQGSVIDLEAYDRATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIIDANGN
VIAHEIFQSVIKTTERMTYKDVYKILEEQDEALMKRYEPLVPMFKNMAELSGILRRKRES
RGAIDFDFKESKVIVNEEGWPVDIELRERTVAEKLIEDFMLAANETVAEHFHWMNVPFLY
RIHEDPKPEKLQRFFEFVTNFGILIKGTGNTVHPKALQDVLKAIEGMPEEPVISTMLLRS
MQQAKYYPESLGHFGLSTDFYTHFTSPIRRYPDLIVHRLIRTYLINKDTSRETVAQWGMA
MDEIADHTSERERRAVDAERDTDALKKAQYMSDKIGEEFEGIVSSITNFGIFVELPNTIE
GLVHISNMTDDYYRFDDRQMIMIGERTNRQFRIGDEVTVRVANVIIEESSIDFEIVGMVT
SYGRTRKAAPTVIHARKNYNDNKGGRSSRSTRSDDEKGGRGGSRRSSRHEEESGSRSTKR
GERREGDRDPRGRRKDDSSSPGPKKRVKQKQKFYEGIAKKNKKKKSKRK
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagggaatatgtatgaaagaccaaaaagatacactacaaggtcggttacttgtt
tttttcggccaagatgattacgagccattaactgtcggcgaaatcgaggatgaattcggc
tttgaggatgcggaagaatttaaggagcttgtcaaaacattagtccgtatggaaggacaa
ggcttagttgttcgttctcgttccaatcgttatggcctaccagaacgtatgaatttacta
agaggtaaatttatcggtcacgcgaagggcttcggttttgtagcgcctgatatggaaggc
atggatgatgtattcattccaccacatgaaattaatggggctataaatggcgatatcgtt
cttattcgtgtgttaaaagaatcatttggtgaccgccgtgaagggaccgtaacaaaggtc
gttgaacgtggtcaaacaagctttgttggcacattccaagctaaccgtggctttggcttt
gttgtccttgacgataagaagctaccaatggatatctttatcgcaaaaggtgatacatta
ggcgcggttgatggacacaaggttgtggtcgaagtagcaacttggccagaagatttaaaa
tctgctacaggttatattacaaaaattttaggacataaaaatgatccaggtgtggatatt
ttatcgatcttatataagcacgatattccacccgaattcccagacgaggtcattgctgct
gcacaaagagtgccagatgacattacagaggctgatttagtaggtcgtcgtgatttacgt
catgaaacgattgtgacaattgatggggctgacgctaaggacttggatgacgcagtaacc
gtaacaaaaaatgtagatggtacttataagcttggcgtacatattgcagacgttagttat
tatgtaacgcaaggctctgtcattgatcttgaagcctatgaccgtgcgacaagcgtttat
ttaacagaccgtgttatcccgatgatcccgcatcgtctatcaaacggcatttgttcatta
aatccgcaggttgatcgtttaacactatcctgtgaaatgattattgacgcgaatggaaat
gttattgcacatgaaattttccaaagtgttattaaaacaactgaacgtatgacgtataag
gatgtctacaaaattctagaagagcaagatgaagcgttaatgaaacgctacgagccactt
gtaccgatgtttaaaaatatggcagagctgtctggcatattacgtcgtaaacgcgaatcg
cgaggggccattgactttgactttaaagaatccaaagtgattgtaaatgaggaaggttgg
ccagttgatattgagcttcgtgagcgtacagtagcagagaagttaattgaggatttcatg
ctagctgccaatgaaacagtagcggagcacttccactggatgaatgtaccattcctatac
cgtattcacgaagatccaaagccagaaaagcttcaacgcttctttgagtttgttacgaac
ttcgggattttaattaaaggtacagggaatacggtgcatcctaaagcattacaggatgtc
ttaaaggcgattgaaggtatgccagaggagcctgttatttcaacgatgctgctacgctcg
atgcaacaggcaaaatattatccagaaagtctaggtcactttggtctatcaacggatttc
tatacacacttcacatcaccaattcgccgttatccggacttaatcgtacaccgtttaatt
cgtacgtatttaattaataaggatacttcacgagaaacggtcgctcagtggggaatggca
atggatgaaattgccgaccacacatcagagcgtgaacgccgtgcggttgatgcagaacgt
gatacagatgctttgaaaaaggcacaatatatgtcagataaaattggcgaagaattcgaa
ggaatcgtgtcatccattaccaacttcggtattttcgtggagttgccaaacacgattgaa
ggacttgtccatattagcaatatgacagatgattactaccgttttgatgatcgtcaaatg
attatgatcggtgaacgtacaaatcgtcaattccgtattggtgatgaagtaacagtccgt
gtggccaatgtcattattgaggagtcatccattgactttgaaatcgttggaatggtaact
tcatatggacgaacacgcaaagcagcgccaacggttatccacgcacgtaaaaattataat
gacaacaaaggtggacgcagtagcagaagcacacgtagcgatgacgaaaaaggagggcgt
ggtggcagccgtagaagcagtcgccatgaggaggaaagcggaagtcgtagtacaaaacgc
ggagaacgccgtgaaggtgatcgcgacccacgtggacgtcgcaaagatgactccagcagc
ccaggtcctaaaaaacgcgtgaaacaaaagcaaaaattctatgaaggcattgcaaagaaa
aacaaaaagaaaaaatcaaaacgtaaataa
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