Lysinibacillus sphaericus: Bsph_4310
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Entry
Bsph_4310 CDS
T00656
Name
(GenBank) Probable ATP-dependent RNA helicase exp9
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lsp
Lysinibacillus sphaericus
Pathway
lsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bsph_4310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsp03019
]
Bsph_4310
03009 Ribosome biogenesis [BR:
lsp03009
]
Bsph_4310
Enzymes [BR:
lsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bsph_4310
Messenger RNA biogenesis [BR:
lsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bsph_4310
Ribosome biogenesis [BR:
lsp03009
]
Prokaryotic type
rRNA helicases
Bsph_4310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
GRP
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACA41769
UniProt:
B1HYP6
LinkDB
All DBs
Position
complement(4187515..4189041)
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AA seq
508 aa
AA seq
DB search
MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNR
PQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINAILENVPSERQTLL
FSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQP
ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTK
KRMTPLRPPTSDEALVGQQRLALDTLEGLIANNNLGDYRTLASEILENHDAIDVVAAALR
SLTKEPDDTPVTISEERPLPMRRERSSSNRGGGDRGRGGNRNYGGRRDSRGGDRRNSSSS
SRREGGRREGGRREGGQGRSRSPRRHED
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagcgaatctacattacgctctgtaaagcgtatg
ggatttgaagaagcaacaccaatccaagaaggtactattcgttttgcaattgaaggccgc
gatgtattaggtcaagcgcaaacgggtactggtaaaactgccgctttcgggattccacta
attgaaaaaattgacccaaaaaaccctaatatccaagcattggttattgctccaactcgt
gaactagctattcaagtatctgaagagctttacaagattggctatgataaacgtgtgaaa
ttattatcagtttacggtgggcaagaaattggccgtcaaatccgtgcactgaaaaataga
cctcaaatcattgttggtacgccaggacgtattattgaccatattaatcgtcgtacgtta
aaattagaagatgtgcaaacattagtactggatgaagctgatgaaatgttaaatatgggc
tttatcgatgatattaatgccatcctagaaaacgttccttcagagcgtcaaacattactg
ttctcagcaacaatgccgccagcaatccgtaaaattgctgaaacatttatgcgtgatcca
gaaatcgtaaaaattaaagcaaaagaattaactgttgataatattgatcaatatttcgtt
aaatcggctgaacgtgaaaaattcgatgttttatctcgtttattaaatgttcaccaacca
gaacttgctattatctttggtcgtacaaaacgtcgtgtagatgagctagcacaagcttta
tcaattcgtggctaccttgctgaagggattcatggtgatttaagccaagctaagcgaatt
tctgtattgcgtcaatttaaagaaaataaaattgatatccttgttgcaacggatgtagcg
gcacgtggtcttgatatttctggtgtcacacacgtatacaacttcgatattccacaagac
cctgaatcttatgttcaccgtattggtcgtactggtcgtgcaggtaagtcaggtcttgct
gttacgtttgtaacgccacgtgaaatgggttacttacgtatcgtagaagaaactacgaag
aaacgtatgactccacttcgtccgccaacatcagatgaagcattagtaggtcaacaacga
ttagctctagatactcttgagggtcttattgctaataacaacttaggtgattaccgtaca
cttgcgtcagaaatacttgaaaatcatgatgcaattgatgttgtagcagctgctcttcgc
tcattaacaaaagagccagatgatacaccggtaacaatttcagaagaacgtccattacca
atgcgtcgtgaacgctctagcagtaatcgcggcggtggagatcgtggtcgcggtggtaat
cgtaactacggaggacgtcgtgactctcgtggtggagatcgccgtaatagtagtagcagt
agccgtcgtgaaggtggtcgccgtgaaggaggccgtcgtgaaggtggacaaggtcgttct
cgttctcctcgacgccacgaagattaa
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