Lucilia sericata (common green bottle fly): 119602670
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Entry
119602670 CDS
T08270
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lsq
Lucilia sericata (common green bottle fly)
Pathway
lsq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119602670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsq03019
]
119602670
Enzymes [BR:
lsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119602670
Messenger RNA biogenesis [BR:
lsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119602670
mRNA degradation factors
3'-5' decay
Ski complex
119602670
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
ResIII
Helicase_C
MTR4-like_stalk
KOW
Motif
Other DBs
NCBI-GeneID:
119602670
NCBI-ProteinID:
XP_037810228
LinkDB
All DBs
Position
Unknown
AA seq
1199 aa
AA seq
DB search
MATIDDENIKKLQNYILSPELSIHDPLPDIIPRKFNEMRLLNLPRGPASTKLVPKRDLIT
GQISAFVEVDLEDVGANANNSTSMKREPGLLDEVTRGSAMNYPFWPGGLDEPAKEIKRLE
TQGFEIEGELLTTPPGFKTGYDFKHNPKYKEELYIPIKTEENVNLLRNLEDDLDVQEWLK
MTQNEDAEKNSEANSLNNQPSEEFKDVDEHIMASELKPVLEISNTKETNLRTEWAEMLDI
SQPITDFKEKIPCPAMSYPFELDTFQKQAILKLEERQYVFVAAHTSAGKTVVAEYAIALS
QRDLTRTIYTSPIKALSNQKYRDFKKTFKDVGLITGDLQIDPTATCLIMTTEILRSLLYC
GSDITRDLEYVIFDEVHYINDPDRGHVWEEVIILLPDHVNIIMLSATVPNTMELADWVGS
TKKRKVYVISTLKRPVPLMHYLYTGSGGKSKDDIFLLVDEHGRFLQDGYDKAVERREAMQ
SKTKRMGGGTGAKNQSTTPKQDQNTWIGLIDFLKRNDKMPVVAFTLSRNRCDRNALALQS
IDLNTARERGSVEMFFQQCLSKLKPPDRVLPQVLTMKDSLGRGIGVHHSGILPILKEIVE
MLFQSGLVKLLFATETFAMGVNMPARTVIFDSHRKFDGLEVRNLKPGEYIQMAGRAGRRG
HDKNGCVILLCKTNVPPVQDLRSMILGKPEKLESQFILRYAVILTCLRIESIKVEDIMKY
SFKEFNQKLQLPAQQKQLEVAQNKFSQMPELGEHLQPLSKFYDLAWEYITEKQRLMKFLI
AQPKIVKELKVGRIVVVTKGNHYNKVGVVLSIKSVAGKDAVYRVLVLDHQFKTDNKNEFQ
RGEMYYKMVALTPQHKFFHPEGIGGHIILDLKAPDFVEITKSSMKIEADIVIRNWEQRQI
ERFKDSPPASTVVKVVSELHQINENYIQNPDTLKFINMSKEINVNADTEMAQIRYLEHVW
RQLQEILPHTNIAGFEEEFANVYERKILEQRIEELKFKNSTKNLSLYPDYCNKLEVLRAL
KYIDELDEVTLKGKVACEMGQNELLITELILCNMFNDLEPAEIAALLSGLVFQAKIQGEP
VIPEKLKKCVKEFEEINDNILAEELRRHAVAESEDRLNFGLLEVVYEWARNKPFAEIMNL
TEVQEGIIVRCIQQLDETLRDVKTAAIRIGNPDLQSKMEEASNAIKRDIVFTASLYTTF
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggccactattgatgatgaaaatattaaaaaattacaaaactatatactctcaccagag
ttatcaatacacgatcccctgccggatataatacctagaaaattcaatgaaatgcgtttg
ttgaatttgccgcgaggaccggcgagcacaaaattggtacccaaacgagatttgattacc
ggtcaaattagcgcatttgttgaagtggatttagaagatgtgggagcaaatgccaataat
tcgacatcaatgaaacgtgaaccgggtttgttagatgaagtaactagaggatcggccatg
aattatcccttctggccaggcggtttggatgagccggccaaggaaatcaaacgtttagaa
acacaaggtttcgaaattgaaggagagttactaactactcctccgggttttaagactggt
tatgattttaaacataatcccaagtacaaggaagagctttacatccccatcaaaacagag
gaaaatgttaatttgcttagaaatctagaagacgatttagatgtccaggaatggctgaaa
atgacccaaaatgaagatgcggaaaagaattcggaagcaaacagtttaaataaccagcca
tcggaagaatttaaagatgtagatgagcatataatggcttcagaactgaaacctgtgttg
gaaatttccaacaccaaagaaacaaatttacgtacagaatgggccgaaatgttggatata
tcacagccgattactgattttaaggagaaaataccctgtcccgccatgagctatcccttt
gagttggatactttccaaaaacaagccatattaaaactagaggaaagacaatacgtattc
gtggcggcccatacttcggctggcaaaacagtggtagcagaatatgccattgctttatca
caaagagatttgacacgcaccatctacacttcacccattaaggctttatctaatcaaaaa
tatcgtgacttcaaaaagacttttaaagatgttggtctcattacaggcgatttacaaatt
gatcccactgccacctgtttgatcatgaccacagaaatcctgagatctctgctttattgt
ggtagtgatattacacgtgatttagaatatgtcatctttgatgaggtacactatataaat
gatccagatcgtggtcatgtttgggaagaagttattattctattacccgaccatgttaat
atcataatgttatcggccactgtgccaaacactatggagctggctgattgggtaggcagc
actaaaaaacgtaaagtgtatgtgataagtactctgaagcgtccggttcctttaatgcat
tatctgtataccggatctggtggcaagagtaaagatgatatttttctgctggtcgacgaa
catggtcgtttcttacaggatggctatgataaggcggtcgagaggagagaggccatgcaa
agtaaaacgaaaagaatgggcggtggtacgggagctaaaaatcaatcaaccacgccgaaa
caggatcagaatacatggattggtttaatagatttcctgaaacgcaatgataaaatgccg
gtagtggcatttacattgtcgagaaatcgatgtgatagaaatgctttggccctacaatct
attgatttaaatacagcacgcgagagaggttctgtagaaatgttcttccaacagtgtttg
tcgaagctgaaaccaccggatcgcgtcttaccacaggttttaaccatgaaagactctctt
ggtcgcggcattggtgtacatcacagtggcattttacctatactaaaagaaattgttgaa
atgctctttcagtctggtctggtgaagctactctttgccactgaaacattcgctatgggc
gtcaatatgccagcacgtactgtcatatttgattctcatcgtaaatttgatggcttagaa
gttcgtaatcttaaaccgggcgaatatatacaaatggctggccgtgctggacgcagaggt
cacgataagaatggttgtgttattttattgtgcaaaacgaacgtaccccctgtacaggat
ttacgttctatgattttgggtaaacctgaaaaattagaatcacaatttatcttgcgttac
gctgtgatattgacctgtctacgtattgaaagcattaaggtagaggatataatgaaatat
tcatttaaggagttcaatcaaaagttgcagttgccagctcaacaaaaacaattggaagtg
gcccaaaataagttctcacaaatgcccgaactgggtgagcatttacagcctttatcaaag
ttttatgatttggcctgggagtatataacggagaaacaaagacttatgaaatttttaata
gctcaaccgaaaattgtgaaagaacttaaagtaggccgcattgtagttgtgactaaggga
aaccactataataaagtaggcgtggttttgtccattaaatctgtagctggcaaggatgct
gtttatcgcgttttagtattggatcatcaatttaaaacggataacaagaacgaatttcag
cgcggtgagatgtactataaaatggtagctcttacgcctcagcataaattctttcaccca
gaaggtattggcggtcacataatacttgatttaaaagcacccgattttgtagaaattacc
aaatcttctatgaaaattgaagcagatatagttattcgcaattgggaacaaagacaaatt
gaacgctttaaagattcaccacccgctagtactgtggttaaagtagtttcggaattacat
caaataaatgaaaactacatacaaaatcctgatactttgaaatttatcaatatgtcgaag
gaaatcaatgtgaatgccgatacggaaatggctcaaatacgttatttggaacatgtatgg
cgccaactgcaagagatcttgccgcatacaaacattgccggcttcgaagaagaatttgcc
aatgtctacgagcgtaaaatactcgaacaacgtattgaagaattgaaatttaaaaattca
acaaaaaatctttctttataccccgactattgtaacaaattggaagttttgagagcttta
aagtacattgatgaattggatgaagttactctcaagggtaaagttgcctgtgaaatggga
caaaatgaattgctgatcacagagttaatactttgtaatatgtttaatgatctggagcca
gccgaaatagctgccttattgtctggtttagtgtttcaagctaaaatacagggcgaaccc
gtcatacctgaaaaactgaaaaagtgtgttaaagaatttgaagaaatcaatgataatata
ttggctgaagagttgagacgtcatgctgtggccgaatcggaagatcgtttaaactttggt
ttacttgaggttgtttatgaatgggctcgcaataagccatttgctgaaataatgaatctt
actgaagtccaagagggtattattgttcgttgcattcaacagttggatgagacattacgc
gatgtcaaaactgccgctatacgcattggcaatcccgatttacaatctaaaatggaagag
gcctcgaatgccattaaacgtgacattgtatttacggccagtttgtatacaacattttaa
DBGET
integrated database retrieval system
