Lucilia sericata (common green bottle fly): 119608875
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Entry
119608875 CDS
T08270
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lsq
Lucilia sericata (common green bottle fly)
Pathway
lsq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119608875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsq03041
]
119608875
Enzymes [BR:
lsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119608875
Spliceosome [BR:
lsq03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
119608875
Complex B
119608875
Complex C
U2 SnRNP specific factors
119608875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
DUF1699
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
119608875
NCBI-ProteinID:
XP_037819360
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MSNYRGIGGGGFPYKSNSNRGGASMNAVPPPSSLNHRGYQKGKIKDSTSAAGTSKYGYTT
LESISQFSNSQNYIGKRKACTEDDYFDDDDEPAPQQQAYQPAPGSPGYEKGKQQESDSDE
DPLDQFMAGIEQQVEKEKVRKDSSVAAVAGLGSSQSKGVRGDIDEEDDEESYYRYMEENP
QAGLRDDGSDVEIEYDEDGNPIAPPKXKNIDPLPPIYHSEIEYESFEKNFYTPHEDIANL
DEEQVRDLRKTLGVKVTGPEPPKPVTSFGHFGFDEPLMKAIRKAEYTQPTSIQAQAIPAA
LAGRDLIGIAKTGSGKTAAFIWPMLVHIMDQRELKPGDGPIGLILAPTRELSLQIYNEAK
KFGKVYNINVVCCYGGGSKWEQSKALEQGAEIVVATPGRMIDMVKMKATNLRRVTFLVLD
EADRMFHMGFEPQVRSICNHVRPDRQTLLFSATFKKRIERLARDVLTDPVRIVQGDLNEA
NQDITQYVYVFPNPMQKWNWLLLNLVRFLSEGSVLIFVTKKADAESVANNLLVKEYNCLL
LHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIPHIKNVVNYDIARDIDTHTHRIG
RTGRAGEKGTAYTLVTEKDKEFAGHLVRNLEGADQQVPDDLMDLAMKSSWFRSSRFKQGK
GKKPTGNHTGLGYRERSGFGSKSSSSSSSATSNDFSSSSSFTSTSKSLSSAGPATDRYAA
MREAFRSQYQSQFKPSTDRTWEETVPETGVFAAPAPPPPSLMNNANSNAQGEKRKTKKSR
WN
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgagtaattatcgtggcataggaggtggtggcttcccttacaaatcaaactctaatcgt
ggaggtgcttctatgaatgcagtgccaccaccttcatcacttaatcatcgtggctatcaa
aagggtaaaataaaggatagcacaagtgcggctggtacctctaaatatggttacactacc
ttagagtctataagtcagttttccaactcacaaaattacatagggaagcgtaaggcctgc
actgaggatgactactttgatgatgatgacgaaccggcacctcaacaacaagcttatcaa
ccggcaccaggttctcccggctatgaaaagggcaaacaacaggaaagtgattcagatgaa
gatcctctggatcaatttatggctggtatagaacaacaggtggaaaaggaaaaagtacgc
aaagatagcagtgtggcagcagttgctggcctgggttctagtcaatccaagggcgtaaga
ggtgatatagacgaagaagatgatgaagaaagttactatcgttatatggaagaaaatcct
caagctggcttaagggatgatggttctgatgttgaaattgaatacgatgaagatggcaac
cccatagctccaccaaaanataaaaatattgatcctcttcctcccatttaccattccgaa
atcgaatatgaaagttttgagaaaaatttctatactccacatgaagacattgccaatttg
gacgaggaacaagttagagatttgcgcaaaactttaggtgttaaggtgacaggcccagag
ccacctaagccggtaacctcatttggtcactttggctttgatgagccactgatgaaggcc
atacgtaaggctgaatatacccagcctacttctatacaggcgcaagccataccagctgct
ttagccggtagagatcttataggtattgctaaaacaggttctggtaaaacggctgcattt
atttggcccatgttggtgcatataatggatcaacgtgaacttaaaccaggcgatggtcct
attggtttgattttagctcccactcgtgaattatccttgcaaatctacaacgaagctaag
aaatttggtaaggtgtataatatcaatgtagtttgctgttacggcggtggctctaaatgg
gaacagagtaaggcattagagcaaggagctgaaattgtagtagccacaccaggtcgtatg
atagacatggttaaaatgaaagccacaaatctaaggagagttacatttttggttttggat
gaagcagatcgcatgtttcatatgggttttgagcctcaggtccgttcaatttgtaatcat
gtcagaccagatcgtcaaactctactcttttcggctacttttaagaaacgcattgaacgc
ttggctcgtgatgttttaaccgatcctgtgcgcattgtccaaggcgatctcaatgaggcc
aatcaagacattacacaatatgtatacgtttttccaaatcccatgcaaaaatggaactgg
ttgcttttgaatctagtacgttttctttccgaaggaagtgttttgatttttgtcaccaaa
aaagcagacgccgaatcggtggccaataatttgctagttaaagagtataattgtctgctg
ctacatggtgacatggatcaggcagatcgtaataaagtcataacacaatttaaacgtaag
gaatgcgatattctagtggccacagatgttgcagctcgtggtttggatataccccatatt
aagaatgttgttaactatgacatagctcgagatattgatacacatacccatcgtattggt
cgtaccggtagagcgggtgaaaagggcacagcttatacactggtaacagaaaaagataaa
gaatttgctggtcatttggtgcgcaatttggagggagccgatcaacaagtgcccgatgat
ttaatggatttggccatgaaaagttcttggttccgtagctcgcgctttaagcagggcaaa
ggcaaaaagcccactggtaaccatactggcttaggttatcgtgaacgctctggctttggc
tcaaaatcatcgtcttcttcctcatccgcaacgtctaatgattttagttctagttcaagc
tttacttctactagtaaatctttgtcttctgctggtccggccacagatcgctatgcagcc
atgcgtgaagcttttcgttcacaatatcaatcacaatttaaaccttcaactgatcgaaca
tgggaggaaactgttcccgaaactggagtatttgcagcacccgcaccacctccgccttca
ttaatgaataatgccaatagtaatgctcaaggggaaaaacgtaaaactaagaaaagtcgt
tggaactga
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