Lucilia sericata (common green bottle fly): 119609223
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Entry
119609223 CDS
T08270
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
lsq
Lucilia sericata (common green bottle fly)
Pathway
lsq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119609223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsq03021
]
119609223
03019 Messenger RNA biogenesis [BR:
lsq03019
]
119609223
Transcription machinery [BR:
lsq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119609223
Messenger RNA biogenesis [BR:
lsq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
119609223
U7-dependent histone pre-mRNA processing factors
119609223
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
119609223
NCBI-ProteinID:
XP_037819876
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MDPILGRSQFLSETVNLFTDEKTANARARVVEWINDINTSEPQVKCELLVKIQETIMSSC
VELLEEFLEHILSLAHDTNMDVRKQVVGFMEQICKVKVEYLGQVVNVISMLLRDRSPQVI
KRVIQASGSIYKNGLQWICSQQELTDSCEQAWNVLSLIKAQILDLIDNENDGIRTNAIKF
LEGVVVLQSYPDEDSQKRENDFSLENIPENLKIIKRKKLEEEALNIFDILLKFHAATHIS
SVNLIACTGSLCTIAKLRPSLMSPVIEAFKSLNSNLPPTLTDSQVSSVRKSLKMQLMALL
KNKGSYEYQSVIKHLLSDLGASQGEVQRAIPKMDKQEQMRRQKRILENATSNLHKKMRLG
KAQTDDKDETQEMVVDEEELEKQRQKSTKVNEKFLAEHLRSTNTVVNLVVEYLPKLPDTA
PEKFLQEYTPIKDLSIAQQVSKISNLLGQQMTEQKIGPGSAAFTKEVPMKVLRKDKVTTN
KAIEEVMEVEEPSGAEAVTLDDEQQRKEEATKKLRENMERMKGEQELIERMKQKAKALKL
QEITKPFPRPLKEKFLMDAVKRILHAERQCIVGGVSAKRRKILTVMAATFPDNVRYFIFE
FIMMDIKQRIDLAFSWLYEEYCLLQGFTRHSYVKSENRPDHAYNELLGQIIMGIINKCEL
RDKILLLRRVYLEAPLLPDESLKPLLKLILMEEYSAYGLDLLKELAILRPPRKAKFLRHL
LNFCVHERLDIREKALEHMVTLYTTQKLLTARIDEFALELASYLEKEIPPASIFGEEYGR
PGIETAWREEIAKICLIMLLTLAPYKAELYLEKLTQIYSNTSADLKRTILRSIDPAIKKL
GAENPLLLQLIEDSPKGCETLIIRIIYILTERQATPAPELVLRVKELHQNKIKDVRVLIP
ILSGLTRQEILSALPKLIKLNQVVVKEVFNRLLSIGAEFANQTMATTPTDILVALHTIDI
NECDLKCIVKATSLCLAEKEVFTQEVLIGVLQQLVEIVPIPTLLMRTIIQSLTLYPRMAN
FVLNILQRLILKQVWRQKVIWEGFLKCLQRLKPSSLPIMLHLPPQQLMNALEQCPDLRPL
LIEYAQSIEEEPMSGITPQIMDIITGKAVDVFITDDTGGFISVENIKKEVDEPMEISTIS
TVTTVPVPLRVRSPDGQAAGGVHDVNQPLPPGED
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggatcccatattgggccgttcccagtttctcagtgaaactgttaacttgtttacagat
gaaaagacagccaacgctagagctcgtgtggtggaatggatcaacgatatcaacacatcg
gaaccacaagtaaaatgtgaattgttggttaaaatccaagaaaccattatgagttcttgt
gttgagctgttggaagagtttttagaacacattttatctttagctcatgataccaacatg
gatgttcgcaaacaggtggtgggttttatggaacaaatatgcaaagtaaaagttgagtat
ttgggtcaagtggtcaatgttatatccatgctgttgcgtgatcgttctccccaagtaatc
aagcgtgttatacaggcttctggtagcatttataaaaatggcttacaatggatatgtagt
caacaagaattaacggacagttgtgaacaggcctggaatgttttgagtttgattaaggca
caaattcttgatcttatagacaatgaaaatgatggcatacgtacaaatgccatcaagttt
ctggagggtgtggtggtgttgcaaagctatcccgatgaagatagccaaaagagggaaaat
gatttttccttggaaaatataccagaaaatctcaaaattattaagcgtaaaaagttggaa
gaggaggctctcaatatttttgatattctattgaaatttcatgcggccacacatatttcc
tcggtgaatctaatagcttgtacgggtagtctctgcactatagccaagttaagacccagc
cttatgagtcctgtgatagaggcttttaaaagcttaaattccaatttgccacccactcta
acagattcacaagttagttcggtgagaaaaagtttaaaaatgcaattgatggctttactt
aagaataagggttcgtacgagtatcaatcggttataaaacatttgttaagcgatttggga
gcctctcagggtgaagtgcaaagagctataccaaaaatggataaacaggagcagatgaga
agacagaaacgtattttggaaaatgctaccagtaatttacacaagaaaatgcgtttgggc
aaggcacaaactgatgataaagatgaaactcaggagatggtggtggatgaggaagagttg
gaaaaacaacgacaaaaatctactaaagttaatgagaaatttctggcagaacatttgcgt
tccacgaataccgtggttaatttggtggtggaatatttacctaaattgccggatacagcg
ccagaaaagtttttgcaggaatatacgcccattaaggatttatctatagcccaacaggtt
tcgaaaatctccaatttattaggacagcaaatgactgagcagaaaataggtcccggctcg
gcagcctttaccaaagaggtgcccatgaaagttttaagaaaagataaagtaaccaccaat
aaagccattgaagaagtaatggaagtggaagagccctctggcgccgaagctgtaaccctg
gatgatgaacagcagcgtaaggaggaagctactaaaaagctgagagaaaatatggaacgt
atgaaaggcgaacaagaactcattgaacgcatgaaacaaaaagccaaagctttaaaatta
caagaaattaccaaacctttcccaagacctttaaaggaaaaattccttatggatgctgta
aaacgtatactgcatgccgaacgtcagtgtatagtgggcggtgtttcggccaagagaaga
aaaattttaactgttatggcagccacatttcccgataatgtacgttattttatctttgaa
tttatcatgatggatattaagcaacggatagatttagccttttcctggttatatgaagaa
tattgtttattacaaggtttcactagacattcctatgttaaatctgaaaatcgtcctgac
catgcctacaatgagctattgggacaaatcattatgggcattataaataaatgtgagtta
agagacaaaatattactgttgaggagggtgtacttagaggctcccttattgcccgatgaa
agtttgaaacctttactgaaattgattttaatggaagaatattccgcttatggtttggat
ttgctaaaagaattggccattttaagaccaccacgcaaggcaaagtttttaaggcatttg
ctaaacttttgcgtacacgagaggttggatataagagaaaaagccttggagcatatggtt
accctatacactacccaaaaactgttaaccgctcgcatagacgaattcgctttagagttg
gcttcttatttggaaaaagaaataccaccggctagcatatttggtgaggaatatggtaga
cccggtatagaaaccgcctggagggaagaaattgccaaaatatgtctcattatgctattg
actttggctccttataaagcggaattgtatttggaaaaattaacccaaatatatagcaat
acctcagcagatttgaaacgtactatattgagatccatagatccggccattaaaaagtta
ggtgctgaaaatcccttactattgcaattgatagaagattcacccaagggctgcgaaacc
ttaattatacgcataatttatatactaaccgaaagacaagctacgcctgcccctgaactg
gtgttaagggttaaggaattgcatcaaaataaaattaaagatgtaagggttttaataccc
atactcagtggtttgacgcgtcaagagatactctctgctttgccaaaattaataaaactt
aatcaggtagtagttaaggaagtcttcaatcgtttgcttagcataggagcagagtttgca
aatcaaactatggccaccacccctactgatatattggtggctctacataccattgatatt
aatgaatgtgatttgaagtgtatagtcaaggccacttctttgtgtttagcggaaaaggag
gttttcacccaggaagtactgattggtgttctgcagcagttggtggaaattgtacccata
cctacgttgcttatgcgtaccattatacaaagtttgaccttatatccacgcatggctaat
tttgttttaaatatattgcaacgtttaatcctcaaacaagtatggcgtcaaaaggtcata
tgggagggttttctcaagtgtttacaacgtttaaaaccttcttcactgcccattatgttg
catttgccaccacaacaattaatgaatgccctcgagcagtgtcctgacttaaggccactt
ttaattgaatatgctcaaagtatagaggaggagcctatgtcgggtataacaccacaaata
atggatatcataacgggtaaagctgtagatgtttttataacggatgacaccggtggcttt
atttcagtggaaaatattaaaaaggaagtggatgaacctatggaaatttccactatatct
acagttaccacggtacctgtacccttgcgtgttcgttctccagatggtcaggcagcgggc
ggagtgcatgatgttaatcaacctttgcctccaggagaggattaa
DBGET
integrated database retrieval system
