Lucilia sericata (common green bottle fly): 119611301
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Entry
119611301 CDS
T08270
Name
(RefSeq) LOW QUALITY PROTEIN: probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
lsq
Lucilia sericata (common green bottle fly)
Pathway
lsq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119611301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsq03400
]
119611301
DNA repair and recombination proteins [BR:
lsq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119611301
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
DUF5399
AAA_22
Motif
Other DBs
NCBI-GeneID:
119611301
NCBI-ProteinID:
XP_037822763
LinkDB
All DBs
Position
Unknown
AA seq
1185 aa
AA seq
DB search
MSKKLNTSLGSSVASPKNNLFNYFSRSPATLEKKKIPVTPSAGGEEKQQKNEKNVMEKEN
LQNKTNKEENSAKQKIKKSKIIDSDEEEEVATTSKKRRRLVLQDSEEEEEEQTKKSRGKA
KDDSDYEPNKDEEMPSENEEEKGDSEVESSPEIKKNHNNNNEPKSKKTKLDATLTAGSFM
DKLEQLKAGSEGKTSKKQEAKCEEVITSNLDEPVVWPHQKLEFLKADKIKDKQGRRPDHP
DYDPSTLYVPPKFLDSLSPGVRQWWVLKSESFDCVLFFKVGKFYELYHMDADVGVNELGF
TYMRGEFAHSGFPEISFDKMASVLVERGYKVARVEQTETPDMMTERCKRIKPTKFDKVVR
REICQITSRGTQVFGSQCQITPNHQPNYMLAIVEQQSAQSGGCSSYGICFIDTSIGDCYL
GEFEDDTNCSRLLTLLSHNMPVLVVLEKANIQEKTQDIMRTVLSGVLKEYMPNVGSMQST
AEKTLKELAEKYYAGGDNWPMVLRTMQSETDHLGLTPHADAKLALKALGLCLNYMKKCHV
AEKVLPMARYHLYQPPDTLALDKVPSKISTNQRAHMVLDATTLMNLRITGEEHSLQSTLD
QCCTKFGKRLLHHWLCAPSCVLSAIVERQEAITDFLNNPSLLQEARALLAPLPDFERHLA
QIHHFGSKIVQESHPDGRAIFFEEKQYNKKKMQNFISILKGFESLLQIPTIFQEADSKLL
KRLTQYKNNVGIFPDLTEELNFFKQAFDHTKAAETGVIAPESGVDEDYDRAEAKIKEINK
KLQEYLVEQEKXFGCRINYFGSDKKRFQLEIPEARCRKVDSSYSLEGQKKGVARRYTTEE
TRSFLKQMQAAEDERNTVLKDLSRRIFEKFSQHYDLWKQCVDCVAHVDVLASLAEYARTQ
QVICIPQLEDVDAGKQAFIEIEEGYHPCVSADTYIPNGVVLGCNDTAPLSILTGPNMGGK
STLMRQVGLLAVMAQIGAHVPAQSCRLSLVDRIFTRLGAQDDILSGHSTFLVELNETSLI
LKHATANSLVLLDELGRGTATYDGTAIAASVVNFLADLKCRSLFSTHYHNLIDFFHKDER
ITLGHMACMVENEDCDDPTQETVTFLYKYSAGACPKSYGFNAAKLAGMPHNIIKRAYTLS
KKVEAIALKRKIAAKIVAAATMGGASKTQSANLKNLLLQLQQCQI
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaaaacttaacaccagcttaggcagttcagtagcctcgcctaaaaataactta
ttcaattatttctctcggtcgccggcgaccctggaaaagaaaaaaattcctgtgacccca
tcagctggaggcgaggaaaaacaacagaaaaacgagaaaaatgtaatggaaaaagaaaat
cttcaaaacaaaaccaataaagaggaaaactcagcgaagcagaagatcaagaaatcgaaa
atcatagattcagatgaagaggaggaagtggccaccacctcaaagaagagaagaagattg
gtattgcaagattccgaggaggaagaggaggaacaaacgaaaaaatctagaggaaaagca
aaagatgatagtgactatgaacccaataaagatgaagaaatgccctcggagaatgaagaa
gaaaaaggggattcagaggtggaatcttccccagaaataaagaaaaatcataacaataat
aatgaacccaaatcgaagaaaacgaaattggatgccactcttacggcgggcagttttatg
gataaattagaacagctaaaagcgggtagcgagggtaaaacttcgaaaaagcaagaagct
aaatgtgaagaagttattacctccaatttagatgagccggtggtgtggcctcatcagaaa
ttggaatttttaaaagcggataaaatcaaagataaacaaggacgtaggccggatcatcca
gactatgatccctccaccctgtatgtgccacccaagtttttggattctttatctccggga
gtacgccaatggtgggttttaaaatccgaaagttttgattgtgtacttttctttaaagtg
ggaaaattctatgaactttatcacatggacgctgatgtaggtgtaaatgaactgggtttt
acctatatgcgcggagaatttgctcattctggttttccggaaatatcttttgataaaatg
gcctcggtgttggtggagagaggctataaagtggcgcgtgttgagcagacagaaactcct
gacatgatgactgaaagatgtaaacgtattaagcccactaagtttgataaagtggtgcgc
agggaaatttgccaaattacttcccggggaacacaagtctttggcagtcagtgtcaaatt
acacctaatcatcaacccaactatatgttggccatagtagagcagcaatccgcccagtca
ggtggctgcagtagttacggcatttgttttatagacacttctataggtgattgttatttg
ggagaatttgaggatgatacaaattgttctcgtttacttaccctgctctcgcataatatg
ccagtcttagtggtattagaaaaagcaaatattcaagaaaagacccaagatataatgcgc
actgttttaagtggtgttttaaaggagtatatgcccaatgtcggttccatgcagagtaca
gctgaaaagaccttgaaagaattggccgaaaaatattatgctggtggcgacaattggcct
atggttttaagaacaatgcagtcggaaacggatcacttgggcttaactcctcacgctgat
gccaagctggctttgaaagccttaggtttatgcctgaactatatgaaaaaatgtcatgta
gcggaaaaagttttacccatggctcgttatcatctctaccagccgcccgatactttggcc
ttagataaagttccctcaaaaatctccactaatcaaagagctcatatggttttagatgcc
accaccttaatgaatttacgtattaccggcgaggaacattcgctgcagtctactttggat
caatgctgcaccaagtttggtaaacgtttgctgcatcattggttgtgtgctccttcgtgt
gttctaagcgctattgtcgagcgtcaagaagctattacagattttctcaataatccctca
ctgctgcaagaggctagagctttattggctcctttgccagatttcgaaaggcatttggca
caaattcatcattttggcagtaaaattgtgcaggaaagtcatcccgatggtcgggctata
ttttttgaggagaaacagtataataaaaagaaaatgcagaattttatttccatactcaag
ggatttgagtctctgttacaaattcctacaatttttcaagaagctgactcaaaattactt
aaacgtttgacacaatacaaaaataacgtgggcatatttccagacctcaccgaagaactt
aatttcttcaagcaagcttttgatcatacaaaagctgccgaaactggtgttattgcaccc
gaaagtggtgtagatgaagattatgacagagccgaggcaaaaatcaaagaaatcaataaa
aagctacaagaatatttagttgaacaagaaaaantattcggttgtcgcatcaactacttc
ggctcggataaaaaacgttttcaattggaaatacccgaagcacgttgccgtaaagtggat
agtagctattctctggagggtcaaaagaaaggagtagcacgtcgttacactacagaggaa
accaggagttttcttaaacaaatgcaagcggctgaagatgaacgtaatactgtcttaaaa
gatttatctagacgtatatttgagaaattctcccaacactatgatttatggaaacaatgt
gtggattgtgtggcccatgtggatgttttagcctctttggcagaatatgctagaacacag
caagttatctgtatacctcaactggaagatgtggacgctggcaaacaagcttttatagaa
attgaagaaggttatcatccttgtgtttcagccgatacttatatacccaatggtgtggtt
ttgggctgtaatgatacagctcctctttctatattaactggtcccaatatgggtggtaaa
agtacacttatgcgtcaggtgggtttgctggcggtaatggcacaaattggtgctcatgta
ccggctcagtcgtgtcgtctgtcgctagtagatcgtatatttactagactaggagctcag
gatgatattctatcgggtcattctactttcttggttgaattaaatgaaacttctttgata
ttaaaacatgccacagcaaatagtttggtactgttagatgaactgggacgtggtactgcc
acctatgatggcactgctatagccgcctctgtcgtcaactttttggccgatcttaaatgt
agatctttattctctactcattatcataatcttatagatttctttcataaagatgaacgt
attactttgggtcatatggcctgcatggtggaaaatgaagattgtgatgatcctactcaa
gaaacggttacgttcctatataaatactctgctggagcttgtcccaaatcgtatggtttc
aatgctgccaaattggcaggcatgccgcataatataatcaaaagagcgtatacgctctcc
aaaaaagttgaagcaattgctttaaaacgtaaaattgcagctaaaattgttgctgccgct
actatgggcggtgccagtaagactcagtcggcaaatttgaaaaatttattactacaactg
caacaatgtcaaatttaa
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