Lucilia sericata (common green bottle fly): 119613502
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Entry
119613502 CDS
T08270
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lsq
Lucilia sericata (common green bottle fly)
Pathway
lsq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119613502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsq03019
]
119613502
03041 Spliceosome [BR:
lsq03041
]
119613502
Messenger RNA biogenesis [BR:
lsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119613502
Spliceosome [BR:
lsq03041
]
Complex B
Other components
Prp19-related factors
119613502
Complex C
119613502
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
TPR_12
Suf
Mad3_BUB1_I
TPR_15
ARM_TT21_C
PPR
TPR_10
RPN7
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
119613502
NCBI-ProteinID:
XP_037825460
LinkDB
All DBs
Position
Unknown
AA seq
879 aa
AA seq
DB search
MSNNDVGSLAMEIDFPEEDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNAVNIVYERALK
ELPGSYKIWYNYLRTRRKQVRGKCITDPMYEEVNNTFERALVFMHKMPRIWMDYGLFMTL
QCKITRTRHVFDRALRALPITQHHRVWPLYLKFVQKFDIPETAVRIFRRYLKLAPDDAEE
YIEYLLSVGRLDDAAQQLASIVDNEHFVSRQGKSNHQLWNELCDLISKNPDKVHSLNVDA
IIRGGLRRYTDQLGHLWNCLADYYVRSGLFDRARDIYEEAIQTVRTVRDFTQVFDEYAQF
EELSLNKRMEFVANDPNATEEDDIDVELRLARFEHLMERRLLLLNSVLLRQNPHNVHEWH
KRVKLYEDKPHEIINTYTEAVQTVQPKLAVGKLHTLWIEFAKFYESNGQVEDARVVFERG
TEVEYVKVEDLASVWCEWAEMEIRQENFDAALKLMQKATVMPKRKVAYHDDTETVQMRLY
KSLKVWSMYADLEESFGTFKTCKAVYDRIIDLKICTPQIIINYGLFLEEHNYFEEAFRAY
EKGIALFKWPNVYDIWNAYLTKFLKRYGGSKLERARDLFEQCLENCPPEHAKYFYLLYAK
LEEDHGLARHAMAVYDRATSAVKPEEMYDMYNIFVKKAAEIYGLPRTREIYEKAIECLPE
ENMRHMCVRFAEMETKLGEIDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMAAQYIANNTPADAAGGDAMRMLDAKAAEANNQQKDKLPLK
PQSSTASNIMFVRGETQGGSAKDKVVNPDEIDIGDSDEDEDEDMDDDDEENNETNDAQKV
TRRDENDVIMKKLKIEQKSIPSKVFGGLKPANNDEDDDD
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaatgatgtaggctctttggccatggaaatagattttcccgaggaggatgtt
ccctatgaggaggagattttgcgtaatgcctactctgtcaaacactggttacgttatatt
gatcacaaagccaaggcgcccaataatgctgtcaatattgtttacgaaagagcgctaaag
gaactgcccggcagttataagatatggtacaactatttacgtacacgaaggaagcaagta
cgtggtaaatgtattaccgatcccatgtatgaggaagtgaataatacttttgaacgagct
ttggtgtttatgcataaaatgcctcgcatttggatggattatggtttattcatgacattg
cagtgtaagattacacgcacccggcatgtttttgatcgtgctctaagagctctgcctatt
acccaacatcatcgtgtatggcctttgtatttgaaatttgtgcaaaaatttgatattccc
gaaacggcggtgagaatctttagacgttatttaaaattggctccggatgatgctgaggag
tatatagagtatttgctgagtgtgggacgtttagatgatgctgcccagcagttggctagt
atagtggacaatgaacattttgtttctaggcagggcaaatcgaatcatcagctttggaat
gagttgtgtgatttgatatcgaaaaatccggataaagtacattccctaaatgtggatgcc
attataagaggaggcctgagaagatacaccgatcaattgggacacttgtggaattgttta
gccgattattatgttcgttctggtctctttgatagagctcgtgatatttacgaggaagcc
atacaaacggtgagaaccgtacgtgattttacccaagttttcgatgaatacgctcaattt
gaggaattgtccttaaacaaacgcatggagtttgtggcaaatgatcctaatgctaccgaa
gaagacgacatagatgtagaattgcgcttggcacgttttgaacatcttatggaaagacgt
ctcctgttgctgaacagtgttctattgcgtcaaaatcctcacaatgtacacgagtggcat
aaacgtgttaaattgtatgaagataaacctcatgagatcatcaatacctacactgaggct
gtgcaaacagtgcaacctaaattggctgtgggtaaacttcacactttatggatagaattt
gcgaaattctatgaatccaatggtcaggtggaagatgctcgtgtggtatttgaacggggc
actgaggtggaatatgttaaggtagaagatttagccagtgtttggtgtgaatgggctgaa
atggaaattcggcaggagaatttcgatgcagcccttaaactcatgcaaaaggctacggtt
atgcctaaacgcaaggtagcctaccacgatgacacagaaactgtgcaaatgcgcctatac
aaatcgttaaaggtctggtccatgtatgctgatttggaagaatcatttggcacctttaag
acttgcaaggctgtctatgatcgtataatagatttgaaaatctgtacaccacaaatcatc
attaactatggtctgttcttggaagagcacaattactttgaggaggcctttagagcttat
gaaaagggtattgctctctttaaatggcctaatgtttacgatatatggaatgcttatctc
accaaattccttaaacggtatggtggttctaaactggaaagagctagagatttatttgaa
caatgtttggaaaattgtcctccagaacatgccaaatatttctatttactttatgccaaa
ttggaagaagatcatggtttggcccggcatgccatggcggtatatgatagagctactagt
gctgtcaagcctgaagaaatgtatgacatgtataatatatttgttaaaaaagcagcagag
atttatggtctgcctcgcactagagaaatctatgagaaggctattgaatgtttacccgaa
gaaaatatgcgtcatatgtgtgtaagatttgctgaaatggaaactaaattgggagaaata
gacagagcgagagcgatatatgcacattgttcacaggtctgtgatccccgcattactgct
gacttttggcaaacctggaaagagttcgaggttagacatggtaatgaagataccatgcgt
gaaatgttgcgtatcaaacgttctgtacaggccacttataatacccaggttaatatgatg
gctgcccaatatatagccaacaatacaccagccgatgctgccggcggtgatgctatgcgt
atgctggatgccaaagcagccgaagcaaataaccaacaaaaagataaactaccactcaaa
ccacaatcatccacagcctcaaatattatgtttgtacgaggcgaaacacaaggtggttct
gctaaagataaagttgttaatcccgatgaaattgatattggcgacagtgatgaagacgaa
gatgaggatatggatgatgatgatgaggaaaataatgaaactaatgatgcacaaaaagtc
acacgtagagatgaaaatgatgtgataatgaagaagttgaaaatagaacaaaagtctata
ccatctaaagtgtttggcggtttaaaacctgctaataatgatgaggacgatgatgattga
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