Lonchura striata (white-rumped munia): 110467565
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Entry
110467565 CDS
T05897
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110467565 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110467565 (CLP1)
Enzymes [BR:
lsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
110467565 (CLP1)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110467565 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
AAA_18
ATP_bind_1
AAA_22
AAA_16
TniB
nSTAND3
MMR_HSR1
CbiA
PduV-EutP
AAA_24
Motif
Other DBs
NCBI-GeneID:
110467565
NCBI-ProteinID:
XP_021380426
UniProt:
A0A218UVW8
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All DBs
Position
5:61118738..61120958
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AA seq
425 aa
AA seq
DB search
MADDGGEEKKQVAKFELERETELRFEVEAGQTVQLELLTGMAEVFGTELTRNKKFTFDAG
AKVAVFTWHGCTVQLSGRTEVAYVSRDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKTTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSCLADVFNQRCEVNRRASVSGCVINTCGWVKSSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTADSPDDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgatggcggcgaggagaagaagcaggtggccaagttcgagctggagcgggag
acggagctgcggttcgaggtggaggcggggcagacggtgcagctggagctgctgaccggc
atggccgaggtgttcggcaccgagctcacccgcaacaagaagttcacgttcgacgcgggc
gccaaggtggccgtgttcacgtggcacggctgcaccgtgcagctcagcggccgcaccgag
gtggcctacgtgtcgcgggacacgccgatgctgctgtacctgaacacgcacacggcgctg
gagcagatgcggcgccaggccgagcgggaggacgagcgcgggccccgcgtcatggtggtg
gggcccaccgacgtgggcaagaccaccgtgtgccgcctgctgctcaactacgccgtgcgc
ctgggccgccggcccaccttcgtggagctggacgtggggcagggctcggtgtccatcccc
ggcaccatgggcgcgctgtacatcgagcgcccggccgacgtggaggagggcttctccctg
caggccccgctcgtctaccacttcggctccaccacgcccggcaccaacatcaagctctac
aacaagatcacgtcgtgcctggccgacgtcttcaaccagcgctgcgaggtgaaccggcgg
gcgtcggtgagcggctgcgtcatcaacacctgcggctgggtcaagagctcgggctaccag
gcgctggtgcacgccgcctccgccttcgaggtggacgtggtggtggtgctggaccaggag
cgcctctacaacgagctcaagcgggacctgccccactttgtgcgcaccgtgctgctgccc
aagtccggcggcgtggtggagcgctccaaggacttccgccgggaatgccgggacgagcgc
atccgcgagtacttctacggtttccgtggctgcttctacccacacgccttcgacgtcaag
ttctccgacgtcaagatctacaaggtgggcgcgcccaccatcccggactcgtgcctgccg
ctgggaatgtcgcaggaggacaaccagctgaagctggtaccggtgacgccggggagggac
atggtgcaccacctgctgagcgtcagcaccgccgacagccccgacgacaacatctccgag
accagcgtggccggcttcatcgtggtcaccggtgtggacctggagcgccaggtcttcacc
gtgctgtccccggctccacgccccctccccaagaacttcctgctcatcatggacattcgc
ttcatggacctcaagtag
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