Lonchura striata (white-rumped munia): 110467921
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Entry
110467921 CDS
T05897
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04512
ECM-receptor interaction
lsr04514
Cell adhesion molecule (CAM) interaction
lsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110467921 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
110467921 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110467921 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsr04131
]
110467921 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
lsr04090
]
110467921 (SDC1)
00535 Proteoglycans [BR:
lsr00535
]
110467921 (SDC1)
Membrane trafficking [BR:
lsr04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
110467921 (SDC1)
CD molecules [BR:
lsr04090
]
Proteins
110467921 (SDC1)
Proteoglycans [BR:
lsr00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
110467921 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
110467921
NCBI-ProteinID:
XP_021381023
UniProt:
A0A218VBJ2
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All DBs
Position
3:complement(103241729..103267771)
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AA seq
309 aa
AA seq
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MINVVAVWLVALCFQAAAPQTTNLNLPPEDLDSSGDEDYMFSGSGAGPLTDKSHTWRIPG
ESTNSSLVAAPVDFSEQPFHATESRTEKEVISPSATSNPVTEEPVVAVKDKVSVLGSPDG
KPTSHIVTTTVRSPTAHFPSVVHVTPSEASAVVHELEPKIPSSDVPDTQDVPEPRSTVHG
EGDVAATPAATAPGDVVPTHEEVSEDGSGDPGDFILTKDEELFPTQNSEVLADSERNAKA
AGASGIMDRKEVLGGVIAGGLVGLVFAVFLVAFMLYRMKKKDEGSYSLDEPKQSNGGYQK
PHKQEEFYA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgataaacgtggtggccgtgtggctggtggccctttgcttccaggctgctgccccgcaa
actacaaatctgaatcttccccctgaagaccttgactcatctggtgatgaggactacatg
ttctcaggttcaggcgcaggtcccctgactgacaagtctcacacctggagaatcccagga
gaatcaactaattcctcactagtggcagcaccagtggatttcagtgagcagccctttcat
gcaactgagagcagaactgaaaaggaagtaatatctccttctgcaaccagtaatccagtg
acagaggaaccagttgtagctgtgaaggacaaagtatcagtcctgggctcacctgatggg
aaaccaacaagccatatagtcacaacaacagtgagaagtcccactgctcactttccatcc
gtggttcacgtgactccttcagaagcctctgctgtggtccatgagcttgaacccaaaatc
cccagctctgatgtgccagacacccaggacgtgcccgagccccgttctactgtccatggt
gagggagacgtcgctgccacccccgcggccacagctccaggggatgttgttcctacacat
gaggaggtttctgaagatggctccggagacccgggagacttcatcttaactaaagacgag
gaattgttccccacccagaactcagaagtactggctgactctgagaggaatgccaaagca
gcaggagcctcgggaattatggacagaaaagaagttcttggaggtgtaattgctggagga
cttgtaggcttggtgtttgcagtgtttctagttgcatttatgctgtacagaatgaagaaa
aaagatgaaggcagctattcactggacgaaccaaaacagtctaatggaggataccaaaaa
ccacacaaacaagaggaattctatgcataa
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