Lonchura striata (white-rumped munia): 110467960
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Entry
110467960 CDS
T05897
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110467960 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110467960 (CPSF3)
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110467960 (CPSF3)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110467960 (CPSF3)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110467960 (CPSF3)
U7-dependent histone pre-mRNA processing factors
110467960 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
RMMBL
Lactamase_B_6
DUF1611
Motif
Other DBs
NCBI-GeneID:
110467960
NCBI-ProteinID:
XP_021381103
LinkDB
All DBs
Position
3:97702684..97719800
Genome browser
AA seq
545 aa
AA seq
DB search
MPPKLFTDGFFQTMLKSGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPD
ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN
HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDD
IGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSG
QKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDND
EVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKPEQGQRISGILVKRNFNYHILSPCD
LSNYTDLAMSTVTQTQAIPYTGPFNLLCYQLQKLTGDVEEIEIQQKPALKVFKNITVIQE
PGMVVLEWVANPANDMYADTVTTVILEVQSNPKIQKAAVNKISKKIDMDVYRKRMEIMLQ
DMFGEDCVSSKDDSVLCITVDGKTANISLDTRTVDCEPGSEDDESLREMVELAAQRLYDA
LSPVY
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgccaccaaagctatttacagatggcttctttcagactatgttaaagtcaggccacgtt
ctgggagcagccatgtttatgattgaaatagctggtgtgaagctgttatatacaggtgat
ttctcaaggcaggaagatagacacctgatggcagctgagattcccaatattaaacctgac
attcttataattgaatccacatatggcactcacattcacgagaagagggaggagcgggag
gcgaggttctgcaacaccgttcacgacattgtgaacagagggggccgagggctcatccct
gtgtttgccctgggtcgagctcaagagctgctcctaatcttagatgaatactggcagaat
catcctgaactccatgatatccccatatactatgcctcctctttggcaaagaaatgtatg
gcagtttatcagacatacgtcaatgccatgaatgacaaaatccgcaagcaaattaacatc
aacaatccttttgttttcaagcacattagtaatctgaagagtatggatcactttgatgac
attggcccgagtgttgtgatggcttccccgggtatgatgcagagtggcttatccagagag
ttgtttgagagctggtgcacagataagagaaatggagtcattattgcaggctactgtgtt
gaaggaactcttgctaagcacatcatgtctgaacccgaagagatcacaactatgtcaggg
caaaaactcccactgaagatgtctgtggattacatttctttttctgctcacacagattat
caacaaactagtgaatttatccgggccctgaaacctccacatgtgattttagttcatggt
gagcagaatgaaatggccagattgaaagcagcattgatacgggagtatgaggataatgat
gaagttcatatagaagttcataatcctaggaatactgaagctgtgacattaaacttcaga
ggagaaaaacttgccaaggtgatgggatctttagcagataagaaaccagagcagggacag
agaatttctggaatcctagttaaaagaaattttaactatcacatcctttctccatgtgac
ctctccaattacacggacttggcgatgagcacggtgacgcagacacaagccattccctac
acgggccctttcaatctgctttgttaccagctgcagaaactcaccggtgatgtagaagaa
atagaaatccaacaaaaaccagccctgaaggttttcaaaaatattactgtgatccaggaa
ccaggcatggtagttcttgagtgggtggcaaatcctgctaatgatatgtatgcagacact
gtaacaacagtgatactggaagttcagtcaaatcccaaaatacagaaagctgcagtaaat
aagatttccaaaaaaatagatatggatgtatataggaagagaatggagatcatgcttcag
gatatgtttggagaggactgtgtgagttccaaagatgactccgtgctgtgcatcactgtg
gatggaaagactgccaacatttccctggacactcggacagttgactgcgagccaggaagt
gaagatgacgaatcccttcgtgaaatggtggaactggcagcacagaggctttatgatgcc
ctcagccctgtgtactga
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