Lonchura striata (white-rumped munia): 110468037
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Entry
110468037 CDS
T05897
Symbol
FREM1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04512
ECM-receptor interaction
lsr04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110468037 (FREM1)
04518 Integrin signaling
110468037 (FREM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
lsr04091
]
110468037 (FREM1)
Lectins [BR:
lsr04091
]
C-Type lectins
Lecticans
110468037 (FREM1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
110468037
NCBI-ProteinID:
XP_031363211
LinkDB
All DBs
Position
Z:52963903..53025657
Genome browser
AA seq
2205 aa
AA seq
DB search
MVKVCWWRKKTPFVKKFFHWCKRLALPYNMKPFEKSWLFLLLPVMLRIVYSSFISVNLGV
KVMKGQSVFLSEEDLNFSIPREKDACKVEVINEPITQRVGKLTPQVFDCHFLPNEVKYTH
NGCPILDEDMVMLRLYRFTETETFVETFTFRVQLLEPDCNIIKMRSHALEVPEYYGLSRV
IDKNVLTFDYDRKINLDCTISIISSETHLPAHGQLITRKVQQGQFHGDQSWSFFPGTKHS
LGQECRNRSCTLGQGDINNKKMSCEEFLRMGIQYRHLDPPSPDTDYIPVRLDLSDRRSKT
LHKTEYAWLPVQIRGAVPNQIPKAAPMAKFILEVDQFILTPITTTTIDAEDNETPKSLLI
FNITKPPPQGFITHLSDHTKPIGSFTWKDLSDMLIAYQPPNNSHTERRNYEVEFEVHDFY
FERSLPITVHLSIRTTDTNAPRVSWNTGLNLLEGQSRPITWQHFQIVDNDDIQNVRLVTV
DGLQHGRLSVRGGKGFMFTVSDIQAGVVHYHHDDSDSTKDFVVFRIFDGSHSIRHKFPIN
ILPKDDSPPFLISNVVIEVHEGQTILIQRSMLHASDMDSSDDYILFNITKPSKAGEVLKN
PGSNMLGYSVNSFLQRDLFNGMIYYHHLGGEVFEDSLEFVLCDSHDPPNLSEPQVMMVHI
IPVDDQLPREAPGVTRHLVVKETEISHLTKKHLHFIDVEEQDRELTYTITTSPFFSCTHG
YSDAGKLFMVDTIPKLVKDPAALALRSFTQHAVNYMKVAYMPPLQDIGPEPQQVQFIFSV
SNQHGGTLYGICFNITILPVDNQAPEVFTTHVRVQEGGMTPITEGHILISDTDTKREHLF
LLLQRQPQHGVVELDNIPMNGGDRISCEDLRTLAVRYRHDDSETLIDDVFFAATDGIHFV
EFILQVKVLPVNDELPVMQTGRVPVLHCLEGEEVVLSSEYIYATDVDSDDMELIFMLARQ
PYHGVVRKAGLAVDRFSQADVIAGLVTYKHTSGEIGLTPSTEILTLIVSDGEAGLDVKDC
CYDGPPSPPLSRDPFPVYDLNITVLPVDNQPPSIVTGASFVVEEGSSAALTAEHLFATDP
DTTADDLEFVLVSPPQFGYIENILPSPGFEKSNTGISIGSFKVKHLKAMSVNYVQARHLR
MEPTEDKFVLYVTDGLHRSAETPFFVLISPTNDEAPEFIARNITVQEGEMKQLDLSVINA
VDLDVPQDPLVFGVVQRPSYGFLINGVHGSDVLHYKELINHDHHSHGLIVHGFSMELLRN
GLKLMYMHDNSENLTDSFKIQLSDGKHKVLRTISVKVIPVNDEKPVLSKKNDIEVNIGEA
QIISSAVLSAEDKDTPRERIYYLFERLPENGQLQLKVGQGWVTLLTGMNCTQEELDMNLV
RYVHTGTVGSKKKDSFTFYLWDGYNRSPAVDFYINIKDLEKGDIAVFTKPLRVPKGDHSY
ITGDVLLALDGTDKPEELLYVITSPPQYGQIEYVSYPGIPITSFSQMDVAQQIVCYIHKA
KAVIGEDTFRFIISNGLRTKNGTFKIALEAADQALPTLSRNMGLRLTEGAMALLTPDILQ
LSDPDTVKENLTFLLAQLPQYGHLYYNGAVLRQYNFTQQDVDNRDVAYKHRGGNSQIDRF
TFVATDRTNQGFIVNGRVQNEPVTFTIQVDRLDKMAPKIIHLHCFSDVELLKNGNYGIYI
TARLLRASDPNTEDDKIIFKILRGPHYGYLENVTTGGFIQEGFSQKDLNSKIILYIINKS
REVNSDNLEFQVTDASGNSAAPQRLELQWSRIEMPQTEYEVCENTGVMSLKITRAGHLGE
SAFITVKVNEISARLGKDFTVTPSKLVQFDPGVSTKMWNIAITYDGLEEDDEVFEVVLNS
PVNAVLGTQTKAVVKILDSKRGQCRYSRSSGQSKHDFWGRGTLFPVSLGSSSPSRPGNVS
LEGIPLPPSKGMRERGGDLWQEHSLANRSRTRLRVTGNGRIVHPSSVFRNETDVVFKYHG
MVSLKIEDDTSSAETKKKAQPQINVISTRKTEIPLADKAEFVAEPRSRHKDFYPFQKACT
LDLKGLLHYEESTQKLFQCDGISWKFWNSQSKEVTMKKCPSGWTYHEGSCYFLVANHKVT
WNTAARVCREQYLGSLTSVANEQHMQWLWDFSGKMPFWIGLNDQVNSGHWEWNGGEPVTY
INWRRGSYHFPVRGRNCVFVQKRGKWQATDCKKVKPNSYICSRKL
NT seq
6618 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaagtctgctggtggaggaagaaaactccttttgttaagaaattttttcactgg
tgtaaaaggctggcactcccttataatatgaagccctttgagaaaagctggctgtttcta
ctgctgcctgttatgttaagaattgtgtactcctcctttattagtgtgaaccttggggtg
aaagtgatgaaaggacagtctgtctttctatcagaagaagacctcaacttttccatcccc
agagagaaagatgcctgtaaagtggaagtaatcaatgaaccaataacacagagggttgga
aaacttactccacaggtttttgactgtcacttccttcctaatgaagtcaaatatacccac
aatggatgtccaattctagatgaagacatggtcatgcttaggctgtacaggtttacagaa
actgaaacgtttgtagaaacattcacctttcgtgtgcagctacttgagccagactgtaac
atcataaaaatgcgctcccatgctttggaggtccctgaatactacggtctgtctagggtg
attgacaagaatgtcctcacctttgattatgacaggaagataaacctggattgcaccatt
tccataatctcttcagaaactcacctgcctgctcatggccagcttatcaccaggaaagtg
cagcaagggcagtttcatggagatcagtcatggagcttcttccctggcactaagcacagc
ctgggccaagagtgcagaaacaggagctgtacactgggccaaggagacattaacaacaaa
aagatgagttgtgaagaatttctgaggatgggaattcagtaccgacaccttgaccccccc
tcacctgacactgattatattcctgtgaggttggatctctcagacagaagaagcaaaact
ctgcacaagacggagtatgcatggctccctgttcagattagaggtgctgttcccaaccaa
atacccaaagctgccccaatggcaaagttcatcctcgaagtagaccaatttattttaact
cctattacaaccacaactattgatgctgaagacaatgaaactccaaagtccctgcttata
ttcaacattaccaagccacctccacaaggctttatcactcacctctctgaccacacaaaa
cctattggctccttcacgtggaaggatctcagtgacatgctcattgcttatcagcctcca
aacaacagccacacagagaggaggaattatgaggtggagtttgaggtgcatgacttctac
tttgaaaggagtttaccaatcactgtgcatctttctatcagaaccacagatacaaatgcc
cctcgggtttcatggaatacaggcctcaaccttctagaggggcaatcccgacccatcaca
tggcagcacttccaaattgtagacaatgatgacatccagaatgttcgcttggtcacagtt
gatggtttacaacatgggagactgtcagtcagaggagggaaaggattcatgttcactgtc
tctgacattcaggctggagttgtccactaccatcatgatgacagtgattctactaaggat
tttgtggtatttagaatttttgatggctcccacagtattcgccacaagtttccaataaat
atcctccctaaagatgatagccctccatttctgatcagcaacgtggtcattgaagttcat
gagggacagacaatcctgattcagcgctccatgcttcatgcttcggacatggattccagt
gatgactacatactattcaatattaccaaaccatcaaaggctggagaagtcttgaagaac
ccaggatcaaacatgttagggtattctgtcaacagttttcttcagagggatctatttaat
ggaatgatttattatcatcatttgggaggagaagtatttgaagattcccttgagtttgtg
ctatgtgatagccatgatcctccaaatctctcagagccacaggtgatgatggttcacatt
atccctgtggatgatcagctacccagagaagctccaggagtgacccgtcacctggttgtt
aaggagactgagatttctcacctaactaagaaacatctccacttcatagatgtggaagag
caagacagggaactcacatacaccataaccacttccccttttttctcttgcacccatggc
tactcagatgctgggaagctgtttatggtggacaccatccccaaactggtcaaggatcct
gctgctcttgcacttcggtcatttactcagcatgctgtgaactatatgaaagttgcttac
atgccacccctgcaggacatcggacctgaacctcagcaagtccagtttattttttccgtc
agcaatcagcatggaggcacattgtatgggatctgcttcaatattacaattcttcctgtg
gacaatcaagccccagaggtttttacaacccatgtgagagtgcaagagggtggaatgacc
cctattacagagggacacattctcatctctgatacagacacgaaacgagagcatctcttc
ctgctcctgcagaggcagccacagcatggagtagtggagctggataacattcccatgaat
ggaggtgacaggatttcctgtgaggacctgcgtaccctggcagtcagatatcgtcatgac
gactctgagactctcattgatgatgttttctttgcagccacagatggcatccattttgta
gagttcattctgcaggtcaaggtgttgcctgtgaatgatgagctacctgttatgcaaaca
ggccgtgttcccgtgcttcactgcctggagggtgaagaagtagtcctctcctcggagtac
atttatgccacagatgtggacagcgatgacatggaactgatattcatgctggcccgccag
ccctaccatggggtagtgaggaaagctggccttgccgtggatcgtttctcccaagctgat
gtcattgctggtttagtcacatacaagcacactagtggtgagattggcctgactccttca
actgagatattaaccttgattgtctcagatggtgaggctggcctagacgtgaaagactgc
tgctatgatggacctccttctcccccactttcacgtgatccatttcctgtctatgacctc
aacatcactgtacttccagtggacaaccaacctccatctattgtaactggtgcaagcttt
gtggtggaggagggctcctcagcagcccttactgccgaacatttatttgccactgaccct
gacaccactgcagatgacttagagtttgtgttggtttctcctccccagtttggttacatt
gaaaacatactgccttctcctgggtttgagaagagcaacactggaataagcataggttca
tttaaggtgaagcacctgaaagccatgagtgtaaactatgttcaagccaggcacttgcga
atggagccaacggaagacaagtttgtactttatgtcactgatgggctacatcgctcagca
gagactccattttttgtgctaatcagcccaaccaatgatgaagctccagaattcatagct
aggaatattactgttcaagaaggggagatgaaacagctggatctatctgttatcaatgct
gttgatttggatgtgcctcaagaccctctggtatttggggttgtgcagaggccctcatat
gggttccttattaatggtgttcatggcagtgatgttctacactataaagagttaattaac
catgatcaccacagccatgggttgattgttcatggcttttccatggagttactgaggaat
ggactgaagctgatgtacatgcatgacaactctgaaaatctcactgacagctttaaaatc
cagctatcagatggaaaacataaagtccttagaaccatttcagtaaaggtcattccagtt
aatgatgagaaaccagtgctgagcaagaagaacgatatagaggtgaacataggtgaagct
caaataatttctagtgctgttctgtcagcagaagataaagatacccccagggagagaatt
tactacttatttgaaagacttccagaaaatggtcagcttcagctcaaggtaggacaaggg
tgggttactctcctaactggaatgaattgcactcaggaagagctggatatgaaccttgtg
agatatgtccacacaggaactgtggggtccaagaaaaaagacagcttcacattttacctc
tgggatgggtacaacagatccccagctgtggacttctacataaatatcaaggacttggaa
aagggagacattgctgtttttacaaaacctcttagagtgccaaaaggagatcacagctac
attacaggtgatgtcctccttgcattggacggtactgacaagccagaggagcttctttat
gtgataacctccccaccccagtatggacaaatagagtatgtcagctatcctggcatccct
attacaagcttcagtcaaatggatgtagcacaacagattgtctgctacattcacaaagcc
aaggcagtcattggtgaagatacattcagattcatcatcagcaatggactgaggactaag
aatgggacattcaagattgccttggaggcagctgaccaggctttgcccactctatctagg
aacatgggattaagattaactgaaggagctatggcacttcttactcctgacatactgcag
ctttcagacccagatactgtgaaagaaaaccttaccttcctcttggctcagctcccccag
tacggtcatctctattataatggggctgtgctacggcagtacaatttcacacagcaagat
gtggacaacagggatgttgcatacaagcaccgaggtgggaattcacagattgacagattt
acatttgttgccacagataggactaaccaaggcttcattgtgaatgggagagtgcagaat
gagccagtgacattcaccattcaggtggaccgcttggacaaaatggcaccaaaaattatc
catctccattgtttttctgatgtggaactgctgaagaatggcaattatgggatctatatt
actgccaggctcctgagagcatctgatcccaatacagaagatgataaaataatttttaag
attttgcgaggtcctcattatggttacctggaaaatgtaacaacaggtggattcattcag
gaaggatttagccaaaaggatttaaacagcaaaatcatactttacattatcaacaaatca
cgagaagtgaattcagacaacttggagtttcaagtgacagatgccagtggaaactctgcg
gcaccccaaaggctggagctacagtggtctcgaattgaaatgccacagactgaatatgag
gtgtgtgaaaacacaggagtgatgtcactgaaaatcaccagggcaggacacttgggggag
tctgcctttataaccgtgaaggtcaatgaaatatctgctaggctgggaaaggacttcaca
gtgactccctctaagcttgttcagtttgatccaggagtgtcaaccaagatgtggaatata
gcaattacctatgatggattagaggaagatgatgaagtctttgaagtggttctgaattcc
cctgtgaatgctgttcttggcacacagacaaaagctgtagtgaaaattttggactcaaaa
agaggtcaatgcagatattcccgttcttctggccaaagcaaacatgacttctgggggaga
ggcacgctgtttccagtttccttgggctcctcatcaccttccaggcctggcaatgtttcc
ttggaagggatcccactgcctccttccaaagggatgagagagcgtggaggggatctgtgg
caggagcacagcttggctaatcggtcaaggaccaggctgagagtaactggaaacggcaga
atagttcatccttcttctgtgtttagaaatgaaacagatgtggttttcaaatatcacggg
atggtatcactcaaaatagaggatgacacctcctcagctgaaaccaaaaaaaaggcacaa
ccacagataaatgtaatctccactaggaaaacagaaatcccactggctgataaggcagaa
tttgtagctgaaccaagatcaagacataaggacttctacccttttcaaaaggcttgtaca
ctagatttaaagggtctcttgcattacgaagaaagcacacagaagttatttcagtgtgat
gggatatcatggaagttctggaattcccaaagcaaggaggtaactatgaagaaatgtccc
tctggatggacttaccatgagggcagctgctacttcttggtagcaaatcacaaggtcacc
tggaacactgctgctcgggtttgcagagaacaatacttggggagtctaacaagtgtggct
aatgaacaacacatgcagtggctgtgggacttcagtgggaagatgcccttttggataggt
ttgaatgaccaagtcaattctggacattgggagtggaatggaggagaacctgtaacctac
ataaactggagaagaggctcctaccattttccagtgagaggaagaaattgtgtatttgtg
cagaagcgaggaaaatggcaagcaactgactgcaagaaggtcaaacctaacagctatata
tgttccagaaagttgtaa
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