Lonchura striata (white-rumped munia): 110468220
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Entry
110468220 CDS
T05897
Symbol
ABCA4
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
110468220 (ABCA4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lsr02000
]
110468220 (ABCA4)
Transporters [BR:
lsr02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
110468220 (ABCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DUF4162
Motif
Other DBs
NCBI-GeneID:
110468220
NCBI-ProteinID:
XP_031361451
LinkDB
All DBs
Position
8:13943217..14014041
Genome browser
AA seq
2445 aa
AA seq
DB search
MQAKYEAKQGQAVEMESAGAYVGAGTRLPGVAQQRRRAGLGRVPSPPSSPRAAGPEGDSA
RRRLRGHPVTSQCVNFLHVCTVASRPCCIRARALRAPQPCEAAGSGGRRGGYVFLCCQAE
HSFRNPSLSAVLTDELRFLVELLWPLSLFLALVWLRKANPLYRQHECHFPNKAMPSAGTL
PWLHGIFCNMNNPCFRSPTHGEGPGVVSNYKNSILARVYKDAQELLLEIPEIHDLGRIWE
ELIIMTQFMETMRTNPERIAGRGIRILDILKDGETLTSFLLENVGLTDFVVYQLINAQVR
PEQFAYGVPSLTLKDIACSEVLLDRFIIFSSRRGLPSVHKAMCALSQDSLQRVEDALYAN
VDFFKLFQILPTVLDRNSPGADLKAWGRVLSNVSQAVQKLARKPSVQDLLRVLQPLVEDG
RPESLGHLVSSLSDLFCGYPEGGGSRVLSFNWYEDNNYKAFLGIDSTRKKSGYLYDNTTT
PFCNALIQNLESNPLTKIAWSAVKPLLMGKILFAPDSPSVREIVKNANSTFEELERLQLL
TKAWEEVGPQLWYFFQNSLQMNMIRDSLKHPTVRDFLNSQMGAEGFTAEHIINFLHNGSS
RSREKGMVDFDWRNIFSAVDQVLRLLSQYLECLTLDKFEAYLDETQLTRQALYLLEENKL
WAAVVFSDLEPTASNLPPHVTYKIRMDIDAVEKTNKIKDRYWDPGPRADPVDDLRYIWGG
FAYLQDMIEHGIIKTQTSTEVPLGIYLQQMPYPCFVDDVFMITLNRAFPIFMVLAWIYSV
SMTVKSIVLEKEMRLREAMKNRGITNGVIWCTWFLDSFSMMAVSTLLLTALIMHGQVLHY
SNPLLFFLFLLTFTTATIMQCFLFSTFFSKANLAAACSGVIYFTLYLPHIVCFVWQDRLT
VNLKILASLLSQVAFGFGTEYLSRYEEQGLGLQWGNIRTSPLEGDEYSFLFSINMMVFDA
FLYGILSWYLDNVFPGDYGLPQPWYFPVLESYWLGSRSPEAEKTATADEKCPESEGVDQK
TTEREKNESNTNKSEEPEKTEEKSDGQGKKDGKNKQCKHKREKEPGEQGKPKTDVQDKDE
ININTFFEPEPTGLIPGVCIQNLVKIFANRPKPAVDGINITFYEGQITAFLGHNGAGKTT
TMSILTGLFPPTSGTVLVGGLDIQTHMDSIRHRLGMCPQHNILFNHLTVAEHILFYSQLK
GRSREEAEQELETMLEDMGLTHKRNEEAQNLSGGMQRKLSVAIAFVGEAKVVVLDEPTSG
VDPYSRRSIWDLLLKYRPGRTIILSTHHMDEADILGDRVAIISQGKLFCSGSPVFLKNCF
GSGFYLTLVRKMRTTKMGRATSFCSCGSQCSCSCSSCVHGGEEGAPELELDGDLNELAEV
IHHHIPEAKLIESIGQELIYLLPNKNFKQRSYASLFRELEETLDDLGLSSFGVSDTPLEE
VFLKVTAESNSEMQKTGDTQENGSALGKTPTENKSAEQTALKTNDASQMPVGRPGDQNEG
RGSRQYKGFQLVHQQMKALLIKRFHHASRSHKDFLAQVVLPASFVLLSLVLTVIIPPFGE
YPALTLHPWIYGQQFTFFSNERPGNEQMVSLTHAFLNKPGFGIRCMKNQPLLNYPCNNMP
TAWSTPAVHPNLSSLLLSQEWSPENPSPSCTCSTQKKLTMLPECPAGAGGLPPPQRVQRS
TEILQDMTHRNISDFLVKTYPTLIKGSLKSKYWVNEQRYGGISIGGRLPVLHVSGDQIVN
FLSDLGRMINVTGGQTSLAAAKEIPNFLKYMETEDNIKVWFNNKGWHAMVSFLNVANNAI
LRANLRTGQDPEEYGITAINHPLNLTKEQLSEVTVLTTSVDAVVAICVIFAMSFIPASFV
LYLIQERVTKAKHLQFVSGVSPVTYWLTNFMWDIMNYALSAGMVVAIFTGFNKKAYASPA
NLPVLVALLLLYGWAIIPMMYPASSFFSIPSTAYVTLSCINLFVGINSSAITFILELFEN
NPSLLKFNKTLKNVLLVLPHFCLGRGLIDLAMNQAVTEVYARFGEERVSDPFQWDFVGKN
LVAMALQGVVFFFLNLLMQHRLFSTRWFAETAMSPIINEDEDVAEERKRIMNGGNKTDIL
QLQELTKIYAGRSKPAVDRLCVGIRPGECFGLLGVNGAGKTTTFKMLTGDTDVTSGDAVV
AGSSILTHISNVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIKRVAEWGIQKL
GLPLYADHLAGTYSGGNKRKLSTAIALIGCPPLILLDEPTTGMDPQSRRLLWDSIVGVLR
DGRAVVLTSHSMEECEALCTRLAIMVQGTFKCLGTIQELKYKFGDGYIVTLKIKAPKSGL
PPDPAPAEKFIRINFPGSLQREKHYNMLQYQICSSSLAKIFRLIISNKENLHIEEYSVSQ
TTLDQVFVNFAKQQMEDEEIPLHPRAAGASREARVSPALHQQAVA
NT seq
7338 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgaagtacgaagcgaagcaagggcaggctgtggaaatggaaagcgctggagcc
tatgtaggcgccgggactcggctgcccggcgtggcgcagcagcggcggcgggccgggctg
gggcgcgttccgagcccgccctccagcccgcgggcagcggggcctgagggggactctgcg
aggcggcggcttcgaggccaccctgtgacttctcaatgtgtcaattttctacacgtttgc
acggtggcgtcacggccgtgttgcattcgggcccgtgcgctgagggcgccccagccctgt
gaggcagcggggtccggcggccgccggggaggatacgtgtttctttgctgccaagctgaa
cattccttcagaaacccttctctttcagcagtgctcacagatgagcttcgttttctagtc
gagcttttatggcctctgtcattgttccttgcacttgtctggctgaggaaagctaatcca
ctgtatcgccaacatgaatgtcacttcccaaacaaggcaatgccatcagcaggaacgctg
ccatggttacatggcatcttctgtaacatgaacaatccctgtttccgcagcccaacccat
ggagagggtccaggtgtagtgtccaactacaaaaattccatccttgcaagggtatataaa
gatgctcaggagcttttactggaaatccctgaaatccatgaccttggaagaatctgggaa
gaactgatcattatgactcagtttatggaaacaatgagaactaatcctgaaagaattgca
ggaagaggaatacgaattctagacattttgaaagatggggagaccctcacttccttcttg
ctagaaaatgttggcctcacagattttgttgtttaccagcttattaatgctcaagtgcga
cctgaacagtttgcctatggtgtccctagcttgactctaaaggacattgcttgcagtgag
gtgctcctggaccgctttattatcttcagcagccgaagaggtctcccttctgtacacaag
gccatgtgtgccctgtcccaggacagtctacaaagagtagaagatgccttatatgcaaat
gttgatttctttaagctatttcaaatacttcccacagtgttggacagaaactcaccaggt
gctgacctgaaggcctgggggagggtgctgtctaatgtctcccaagcagtgcaaaagctg
gccaggaagccaagtgttcaggaccttttaagggttctgcaaccacttgtagaagatgga
aggccagaatccttaggccacttggtgagttcgctgtcagatcttttctgtggctaccca
gaaggaggtggatccagagtgctttccttcaactggtatgaagataacaactacaaagct
ttcctggggattgactcaacaaggaagaaatctggttatctttatgataatacaaccaca
cccttttgtaatgcactgatccagaacttggaatcaaaccctttaacaaaaatagcctgg
agtgctgtgaagcccctgctaatgggaaaaattctctttgctcctgactcaccttctgta
cgggaaattgtaaaaaatgcaaactccacttttgaggaacttgaacgcctccaactgttg
accaaagcttgggaagaagtaggacctcagctgtggtacttctttcaaaacagcctgcaa
atgaatatgatccgtgactctttgaagcaccctacagtgagggacttcctgaacagccag
atgggtgcagaaggcttcaccgcagaacatataatcaactttctgcacaatggatcttca
aggagccgggagaagggaatggtggactttgactggcggaatatcttcagcgctgtagac
caagttctgcgtttgctcagtcagtatttagagtgtttgaccttggataaatttgaagct
tatcttgatgaaactcagctgactcgtcaagccctttatctgctggaggaaaacaaatta
tgggctgctgtggttttttcagacttagaacctacagccagcaatctcccaccacatgta
acatacaagatccgaatggacatagacgcagtggagaaaacaaacaaaatcaaagatagg
tactgggatcctggtccaagagctgatcctgttgatgatttacgttatatctggggaggt
tttgcatatctccaggacatgattgagcatggaattataaagacccagaccagtactgaa
gtgccattgggaatttatctgcagcaaatgccatatccatgttttgtggatgatgtcttc
atgatcaccttaaaccgcgcctttcccatcttcatggtgctagcttggatatattcagtc
tccatgactgtgaagagtatagtgctggagaaagaaatgcgtctgagagaggctatgaag
aacaggggcataaccaacggtgtgatttggtgcacttggttcctagacagcttttccatg
atggctgtgagcacactcctcctcacagctctgattatgcatggacaagtgctacattat
agcaatccacttctgttctttctattcctgctgacattcaccacagccaccataatgcag
tgtttcttgttcagcaccttcttctccaaagcaaatctggcagctgcctgcagtggagtc
atctacttcaccttgtacctgccccacatcgtctgctttgtctggcaagaccgtctgact
gttaatctgaagatcctagcaagtttgctttctcaagtagcttttgggtttggtacagaa
tacttgtcacgctatgaagaacaaggtcttggcctacagtggggtaacatcagaaccagt
cccttggaaggagatgaatatagttttctgttttccattaacatgatggtttttgatgct
tttctctatggaattctttcttggtatcttgataacgtttttccaggggactatgggtta
ccacagccttggtatttccctgtgctggaatcctattggcttggttccagaagcccagaa
gctgagaaaacagcaactgctgatgagaaatgtccagagtcagaaggtgtggatcagaag
accacagaaagggaaaaaaatgaaagcaacacaaataaatctgaagaacctgaaaaaaca
gaagaaaagagtgacggccaggggaagaaggatggtaaaaacaaacaatgtaaacacaaa
cgagaaaaagaacccggcgagcaggggaagcctaaaacagatgtccaggacaaagatgaa
attaatataaataccttctttgagcccgagccaacaggattgattccaggagtgtgtatt
cagaacctggtgaagatttttgcaaacaggcccaaaccagcagtagatgggataaatatt
actttttatgagggtcagatcaccgccttcctcggtcacaatggagcaggaaagacaact
accatgtcgatactgacaggcctgttcccacccacatctggaactgtgctggttggcggc
ctggacatccagactcacatggactccattcggcacagattagggatgtgccctcagcac
aacatcctattcaatcaccttactgtagcagagcacatcttgttttattctcaactgaaa
ggaagatccagggaagaagctgagcaagagctggaaacaatgctggaagacatgggcctc
acccataaaagaaatgaagaagctcagaatttgtcaggtggaatgcaaaggaaactgtct
gttgccattgcttttgtgggtgaagcaaaagtggtagtcttggacgagcccacttctgga
gttgatccatattccaggcgatctatctgggatcttctgctgaaatatcgcccaggcaga
actattatcctgtcaactcatcatatggatgaggcagacatccttggagacagagtagcc
atcatatctcaagggaaactcttctgctcaggctctcctgtattcctaaagaactgtttt
ggctctggcttttatctcacccttgttcgtaaaatgagaaccacaaaaatgggaagggct
acatcattttgtagctgtggatctcagtgctcctgctcctgctccagctgtgtgcacggg
ggtgaagaaggagctccagagctggaactggatggagatttaaatgagctagcagaagta
atccaccatcatatcccagaagcaaaattaattgaaagcattggccaggaactcatttat
cttttgcccaataaaaactttaaacaacgatcttatgccagtctcttcagagaactggaa
gaaacactggatgacttgggactcagcagttttggagtttcagacacaccacttgaagag
gttttcctaaaggtcacagcagaatctaactctgaaatgcaaaaaacaggagatactcaa
gaaaatggttctgctcttggcaaaactcctactgagaacaaatcagctgaacaaactgcc
ctgaaaactaatgatgcttctcaaatgccagtaggcagaccaggagaccaaaatgaaggc
agagggtcccgacagtataaaggctttcagcttgtacatcagcagatgaaagcactgctc
atcaaacgcttccaccacgcctcccgcagccacaaggacttcctagcacaggttgttctc
cctgctagttttgtgttgctgtctctagtacttacagtcattattcctccatttggagaa
tatcctgccttaactttacacccttggatttatgggcaacagtttactttcttcagcaat
gaacggcctggcaatgagcagatggtctcccttactcatgctttcttgaataaaccagga
tttggaattcgctgtatgaagaatcagcctcttttgaactacccatgcaataatatgcca
actgcctggagcacacctgctgtccatcctaatctaagcagcctcctgctgagccaagag
tggagccctgaaaatccatcaccttcctgcacgtgcagcactcaaaagaagctcactatg
ctgccagaatgccctgcgggtgcaggaggcctcccaccaccacagagagtgcaacgcagc
acagaaattcttcaagatatgacccacagaaatatttcagattttctggtgaaaacatat
cctactttgataaaaggaagcttgaagagtaaatactgggtcaatgagcagagatatgga
ggaatctctataggaggaaggcttccagttcttcatgtctctggagatcaaattgtcaat
tttttaagtgatcttggccgaatgataaatgtgacaggaggacaaacttcactggctgct
gctaaagaaatccctaatttccttaaatacatggaaactgaagataatattaaggtgtgg
tttaacaataaaggctggcatgctatggttagtttcctcaatgtagccaataatgcaatc
ctcagagctaatctgaggactggccaagaccctgaggaatatgggatcactgctataaac
catcctctgaacctcaccaaggagcaactctctgaagtcaccgtactgaccacttcagtg
gatgctgttgttgccatctgtgtgatttttgccatgtcctttataccagccagttttgtt
ttatacctgatccaagaacgtgtgacaaaagccaagcatctccaatttgtcagtggtgtg
agccctgttacctattggctaactaacttcatgtgggacataatgaattatgccctgagt
gctggaatggttgtggcaatattcactggattcaacaagaaagcatatgcctccccagcc
aatctccctgtgctcgttgccttgctgctcctgtatggatgggcaataattcccatgatg
taccctgcttcttctttcttcagtatccccagcactgcttatgttacactgtcttgtatt
aatctctttgtgggaatcaacagcagtgccattacattcatcctagaattatttgaaaat
aatccgtctttgctgaagtttaataaaacattgaaaaacgtactgcttgtcctcccacat
ttttgtctgggccgtggactcatcgacttggccatgaaccaagctgtgactgaagtatat
gcgaggtttggtgaggagcgtgtttctgatccctttcagtgggactttgttggaaaaaac
ctggttgccatggctcttcaaggagttgtgttcttctttctgaatctcttaatgcagcac
cgtttgttctccacaagatggtttgctgagactgccatgtcacctattattaatgaagat
gaggatgttgcagaagaaagaaaaagaattatgaatggaggaaacaaaacagatatctta
caattacaagaactgaccaagatttatgcagggcgaagcaagcctgcagtggacagactc
tgtgttggcatccgtcccggagagtgttttggccttttgggagtgaatggtgctggcaaa
acaacaacattcaaaatgctgactggagatactgatgtgacatctggagatgctgtagtg
gctggcagtagtatattgacccatatttctaatgttcatcaaaacatgggatactgccct
cagtttgatgccattgatgacctgctcacaggacgagaacacctctatttatatgcacgc
ttgcgaggggttccagcagaagaaatcaagagggttgcggaatggggcatccagaagctg
ggacttcctctgtatgcagaccacctggcagggacctacagtggaggcaacaagcgcaag
ctctccactgccattgccctgataggctgcccaccactcatcttgctagatgaaccgact
accgggatggaccctcagtcccggcgcctcctgtgggactcgattgttggcgtgctcaga
gatgggcgagcagtggttctaacctcacacagtatggaagaatgtgaagctctctgtact
cgtttagccatcatggtacaaggtaccttcaaatgcctaggcacaattcaggagctaaaa
tacaagtttggagatggctacattgtcactctgaaaatcaaagctccaaagtctgggctg
cctccagatcctgctcctgctgagaaattcatacgcatcaacttcccagggagtttacag
agagagaaacactacaacatgctgcagtatcagatttgctcttcctctctggctaagatt
tttcgattaataatctccaataaggaaaatttgcatattgaagaatattctgtgtctcaa
acaacattagatcaggtttttgtgaactttgctaaacagcagatggaggatgaggaaatt
cctttgcatccgcgtgcagctggagccagccgagaagccagggtgtccccagctctgcat
cagcaggccgttgcatag
DBGET
integrated database retrieval system
