Lonchura striata (white-rumped munia): 110468225
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Entry
110468225 CDS
T05897
Symbol
TRIM71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110468225 (TRIM71)
04121 Ubiquitin system [BR:
lsr04121
]
110468225 (TRIM71)
Enzymes [BR:
lsr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110468225 (TRIM71)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110468225 (TRIM71)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
110468225 (TRIM71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-RING_5
zf-C3HC4
zf-RING_UBOX
DUF4094
Motif
Other DBs
NCBI-GeneID:
110468225
NCBI-ProteinID:
XP_021381587
LinkDB
All DBs
Position
2:complement(42017609..42071194)
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AA seq
878 aa
AA seq
DB search
MASFPESDFQICPLCKEMCGSPAPLSSNSSTSSSSSQTSSSSGGGGGSSCGGPPRRLHVL
PCLHAFCRQCLEAQRHPGAGDALKLRCPICDQKVVISEPSGMDALPSSNFLLSNLLDVVV
VAAAADEQKNGRAAGAGPAAGSGGGGGGNNRHHGRPPPGPPRAAGSSPAAAASAAPSSTS
SSSSSSGGGGGSAALLLRRPHSRQGEPRCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRV
RLTKDHFIERFAAGPAAAGPAAPLALSPPYPASPYNILSVFPDRASYCQHHDDEVLHFYC
DTCSVPICRECTMGRHVGHSFIYLQDALQDSRTLTIQLLADAQQGRQAIQLSIEQAQAVA
EQVEMKAKVVQSEVKVVTTRHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNK
LDNTISAVQQVLEEGRTMDILLARDRMLAQVQELKNVRGLLQPQEDDRIMFTPPDQALYM
AIKSMGFVSSGAFAPLTKATGEGLKRALQGKVASFTVIGYNHDGEPCLSGGDMISAVVMG
PDGNLFGADVSDQQNGTYLVSYRPQLEGEHLVSVMMCNQHIENSPFKVMVKSGRSYIGIG
LPGLSFGSEGDSDGKLCRPWGVSIDKEGFIIVADRSNNRIQVFKPCGTFHHKFGTLGSRP
GQFDRPAGVACDISRRIVVADKDNHRIQIFTFEGQFILKFGEKGAKNGQFNYPWDVAVNA
EGKILVSDTRNHRIQLFGPDGVFLNKYGFEGVLWKHFDSPRGVTFNHEGHLVVTDFNNHR
LLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFESNGSFLCK
FGTQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILVF
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtttccagagtccgacttccagatctgcccgctgtgcaaggagatgtgcggc
tcgccggctcccctctcgtccaactcctccacctcctcgtcctcctcgcagacctccagt
tcctccgggggcggcggcggctcctcctgcgggggcccgccgcggcggctccacgtcctg
ccctgcctgcacgccttctgccgccagtgcctggaggcgcagcggcaccccggcgcgggg
gacgcgctcaagctgcgctgccccatctgcgaccagaaggtggtgatctcggagccctcg
ggcatggacgcgctgccctcctccaacttcctcctcagcaacctgctggacgtcgtcgtc
gtggcggccgccgccgacgagcagaagaacggccgcgccgccggggccggccccgccgcg
gggtcgggcgggggcggcggcggcaacaaccggcaccacggccgcccgccgccggggccg
ccccgcgccgccggctcctcgcccgccgccgccgcctcggccgcgccctcctcgacgtcg
tcgtcgtcctcctcctcgggcggcggcggcggctcggcggcgctcctgctgcggcggccc
cacagccggcagggcgagccccgctgcagctcctgcgacgagggcaacgccgccagctcc
cgctgcctcgactgccaggagcacctgtgcgacaactgcgtgcgggcgcaccagcgcgtc
cgcctcaccaaggaccacttcatcgagcgcttcgccgccggccccgccgccgctggcccc
gccgcgccgctcgccctcagcccgccctaccccgcctcgccatacaacatcctctctgtc
ttccccgaccgggccagctactgccagcaccacgacgacgaggtactgcatttctactgt
gatacctgttctgtccccatatgtcgggaatgtaccatgggacgacatgtgggtcacagc
tttatctacctccaagatgcactgcaggactccaggactctcaccattcagctcctggca
gatgctcagcaaggacgacaagctattcaactgagtattgagcaggcccaggctgtggca
gagcaagtcgagatgaaagccaaggtggtgcagtctgaagtcaaagtggtgaccactaga
cataagaaggccttggaggagcgggagtgtgagctgctctggaaggtggaaaagattcgc
caagtcaaggccaagtcactctacttgcaagttgaaaagttacgtcagaacctaaacaag
ctggataacaccattagtgctgttcagcaggtcctggaggagggtcgtaccatggatatt
cttctggctcgggaccgcatgctggctcaggtgcaggagctgaagaacgtcagaggcctt
ctccagccacaggaagacgacaggatcatgttcaccccccccgaccaggcattgtacatg
gccattaaatcaatgggctttgtcagcagcggggctttcgctcccttgaccaaagccacg
ggggaaggtctcaagcgtgcgctgcagggcaaggtggcctcattcactgtgattggctac
aaccacgacggggagccttgcctttcagggggtgacatgatctccgcagtggtcatgggc
ccagatggaaacctttttggggcagatgtcagcgatcagcagaacggaacctacctggtc
agctaccgtccccagctggagggagagcacctggtgtctgtgatgatgtgcaaccaacac
attgagaacagccccttcaaagtgatggtgaagtccgggcgcagctacatcggcatcggg
ctgccggggctgtccttcggcagcgagggagacagcgacggcaagctctgccgcccctgg
ggggtcagcatcgacaaagaaggcttcatcatcgtcgccgaccgcagtaacaaccgcatc
caggtgttcaagccatgcgggaccttccatcacaagttcggcacgctgggctcccggccg
ggccagttcgatcgccctgccggcgtggcctgtgacatttcgcgtaggatcgtcgtggcc
gacaaggacaatcatcgcatccagatcttcaccttcgaggggcagttcattctgaagttt
ggggagaaaggagcgaaaaacggtcagttcaattacccgtgggatgtggctgtcaatgca
gagggcaagatcctggtctctgacacgaggaaccatcgcattcagctgttcgggcccgac
ggcgtgttccttaacaagtacggctttgaaggggtactctggaagcactttgattccccc
agaggtgtgacgttcaatcacgagggtcacttggtagtgacggacttcaacaaccatcgc
ctcttggtcatccatccagattgtcagtcggcgcgcttcctgggctccgagggcaccggc
aacggccagttcctgcgcccgcagggagtggcggtggatcaggaagggcgcatcatcgtg
gccgactccaggaaccaccgggtgcagatattcgagtccaatggtagctttttatgcaag
tttggcactcagggaagcggctttggtcagatggaccgtccttcaggtatagctgtcacc
cctgatggcatgattgttgtggtcgactttggaaacaatcgaattctcgtcttctaa
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