Lonchura striata domestica (Bengalese finch): 110468510
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Entry
110468510 CDS
T05897
Symbol
USP38
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 38
KO
K11854
ubiquitin carboxyl-terminal hydrolase 35/38 [EC:
3.4.19.12
]
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lsr01002
]
110468510 (USP38)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110468510 (USP38)
Enzymes [BR:
lsr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
110468510 (USP38)
Peptidases and inhibitors [BR:
lsr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
110468510 (USP38)
Ubiquitin system [BR:
lsr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
110468510 (USP38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Usp38-like_N
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
110468510
NCBI-ProteinID:
XP_021382178
LinkDB
All DBs
Position
4:11806868..11824907
Genome browser
AA seq
1038 aa
AA seq
DB search
MDKILEGLVSSSHPLPLKRVIVRRVVESAETPLSQAQCRAMFALGTRLVLQGPDPFQRQV
GRQVLDAYGRFHRAEFEAFFNRGLVLGLLQRGYGELSNRDPAILDYIQAGLRLIMSCPSV
LELFELLQVEALRLVCERPAPPLCARLCQLLGDFPQCLPRGRKLSLAFCQQLVRSIAHFQ
SQGTREAELRLYVSQVTQVSALLRSVWKAEPDTLLPSLQELFAVISATDTSFEPSVALAS
LVQHIPLQMITVLIRSLTTDPNVKDASMTQALCRMIDWLSWPLAQHVETWVIALLKGLAA
VQKFTILIDVTLLKIELVFNRLWFPLVRPGALAVLSHMLLSFQHSPEAFHLIVPHVVSLV
HSFKRDGLPSSTAFLMQLTELIHCMMYHYSGFPELYEPILEAIKDMPKPTEEKIKLILSQ
SAWTSQYSSLPSCLSRLSGKSETGKTGLINLGNTCYMNSVIQALFMATDFRRHVLSLNLN
GCNSLMRKLQHLFAFLAHTQREAYAPRIFFEASRPPWFTPRSQQDCSEYLRFLLDRLHEE
ERTLKALSSAKSSENIMTDKSQAQETAHKTQVFTEVPCMGSEERTLIEKMFGGKLKTNVC
CLNCKSMSQKEEAFTDLSLAFCPPTSLENADPKCIEHSEVKDDYMVQSNTSATSPAAETC
LSNLEVNRGCDTVMNEGTTEDFTSEPSSENTTISELKVENNGDMSQSLVGKNTLSVTDLL
NYFLAPEILSGDNKYYCEKCASLQNAEKTMQIIEEPEYLILTLLRFSYDPKCHIRRKILD
NVSLPLVLELPVKRATSPLAVVSGGWSVGVEISDTGENLAKKLKPSGADEVACPQLVPYV
LSSVVVHSGVSSESGHYYSYARNVTGSGPSGLCHQSTALSLVSPQDKLFTEESPCTVVEN
ELDTEMPREWFLFNDSRVTFTSFQSVQKITSRFPKDTAYVLFYKKQNSTCGFNANPANGL
WVNGDPPLQKDLMDAITKDNKLYLQEQELSARTQALQAASASCSFRPNGFDDNDPPGSCG
PTGGGGGGGFSTVGRLVF
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggacaagatcctggaggggctggtgagctcctcgcacccgctgccgctgaagcgggtg
atcgtgcggcgcgtggtggagtcggcggagacgccgctgagccaggcgcagtgccgcgcc
atgttcgcgctcggcacccggctggtgttgcagggccccgaccctttccagcggcaggtg
ggccggcaggtgctggacgcctacggccgctttcaccgcgccgagttcgaggcgttcttc
aaccgcgggctcgttctcggcctcctgcagcgcggctacggcgagctgagcaaccgcgac
cccgccatcctcgactacatccaggcgggcctgcgcctcatcatgagctgcccctcggtg
ctggagctcttcgagctgctgcaggtggaggcgctccgcttggtgtgcgagcggccggcg
ccgccgctctgcgcccgcctctgccagctgctgggcgacttcccgcagtgcctgccccgc
ggcaggaagctctcgctcgccttctgccagcagctggtgcgcagcatcgcccacttccag
agccagggcacccgcgaggccgagctgcgcctctacgtctcgcaggtgacccaggtcagc
gcgctgctcaggagcgtctggaaggccgagcccgacacgctgctgccctccctgcaggaa
ctcttcgctgtcatctctgccacggatacttcgttcgagccttctgttgcactggcaagt
cttgtgcagcacataccattgcagatgattacagtactcatcaggagccttactacagat
cctaatgtgaaagatgcaagtatgactcaagctctgtgcagaatgattgactggctgtcc
tggcctctggctcagcacgtggaaacatgggtgattgcactgctgaaaggattggctgca
gtccagaaatttaccatcctcatcgatgtcactctgcttaagattgaattggtctttaat
cgactttggtttcctctagtgaggcctggtgcccttgctgttctttcccacatgttactt
agtttccagcattctccagaagcttttcatttgattgttccacacgtggtcagtttggtt
cactccttcaaaagagatggcttgccttccagtacagcctttttgatgcagttgactgag
ttgatacactgtatgatgtatcattattcaggttttccagagctctatgaacccattctg
gaagctattaaggatatgcccaaacccactgaagagaagattaagttgatcctcagtcag
agtgcctggacttctcaatacagttctttgccatcttgtttatctagactttctggaaaa
tctgaaaccgggaagacaggcctaataaatctaggaaatacttgctacatgaacagtgtt
attcaggcactttttatggctacagatttcagaagacatgttttatctctgaatctaaat
ggctgtaattccctaatgagaaaattacagcatctttttgcatttttggcccatacccag
agagaagcttatgctcctagaattttctttgaagcttccagaccaccatggttcactcct
cgatcccagcaggattgttcagaatatctcagattcctgctagacaggttgcatgaagaa
gagagaactttgaaagcattgtcttcagccaagagttctgaaaatattatgactgataaa
tcccaggcacaagaaactgcccataaaacacaagtatttactgaagtaccttgtatggga
agtgaagaaagaactctgatagagaagatgtttggaggaaaattgaagactaacgtatgc
tgtttgaactgcaaaagtatgtctcaaaaggaagaagctttcacagatctctctttggct
ttctgtcccccaacttccttagaaaatgctgacccaaaatgcatagaacattctgaagtg
aaagatgactacatggtgcaaagtaatacttcagcaaccagtcctgctgcagaaacatgt
ctcagtaatttggaagtaaatcgtggatgtgacacagtaatgaatgaaggaaccacagaa
gattttactagtgagccaagctctgagaataccacaatttctgaactcaaagttgaaaat
aatggggatatgtctcagagtctagtaggtaaaaataccctgtcagttacagacttgctc
aattattttctggcacctgagatccttagtggagacaacaaatattattgtgaaaagtgt
gcctctctacagaatgctgaaaaaactatgcagatcattgaggaacctgaatacctcatc
ctcactcttttgagattttcatatgatccaaagtgtcacataaggcgcaaaatcttggac
aatgtttctctaccacttgtattggaactgccagtgaaaagagcaacatcccctttagct
gttgtttcaggaggctggtctgttggtgtggagatttctgatactggagaaaaccttgct
aaaaaactgaagccctctggtgctgatgaagtggcctgcccacaactggtgccctatgtg
ttaagctctgtggtggtgcattctggtgtatcctctgaaagtggacattattattcatat
gctagaaatgttactgggtcagggccttcggggctctgccaccagtctacagctctttct
ttagtttctcctcaggataagttgtttacagaggagagtccttgtactgttgtagaaaat
gagctggacactgagatgccaagagaatggtttctgttcaatgacagcagagtgacattt
acctcatttcagtcagtccagaaaatcaccagtagatttccaaaggacactgcttatgtt
ctgttttacaaaaagcagaacagcacctgtggcttcaacgccaatccagcaaatggcctc
tgggtaaatggagaccctcctctacaaaaagacctcatggatgcaattacaaaagataac
aaactatacttgcaggagcaagagcttagtgctcgaacacaagcacttcaagctgcctca
gcctcttgctctttccgacccaatggatttgatgacaatgatcccccgggaagttgtggg
ccgacaggtggaggaggagggggtgggttcagtaccgtcggtagattggtcttttga
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