Lonchura striata (white-rumped munia): 110468512
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Entry
110468512 CDS
T05897
Symbol
SMARCA5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110468512 (SMARCA5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110468512 (SMARCA5)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110468512 (SMARCA5)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
110468512 (SMARCA5)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
110468512 (SMARCA5)
RSF complex
110468512 (SMARCA5)
WICH complex
110468512 (SMARCA5)
B-WICH complex
110468512 (SMARCA5)
NORC complex
110468512 (SMARCA5)
BRF complex
110468512 (SMARCA5)
NuRF complex (fruit fly)
110468512 (SMARCA5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
110468512
NCBI-ProteinID:
XP_021382184
LinkDB
All DBs
Position
4:11989206..12012148
Genome browser
AA seq
1039 aa
AA seq
DB search
MSAGQPPRPDEPPAPPLPPGANTGEAAGTGPPCAAGLAGGDAKMEEPFDDTSLAKQKEIQ
ETDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQN
LLSAGDYRHRRTEQEEDEELLTESSKTTNVCTRFEESPSYVKWGKLRDYQIRGLNWLISL
YENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLQNWMNEFKRWVPT
LRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIK
NEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWFDTNNC
LGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI
LNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPK
LKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHNERQASINAFNDPDSSKFV
FMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE
ERIVERAEMKLRLDSIVIQQGRLVDQNLNKLGKDEMLQMIRHGATHVFASKDSEITDEDI
DHILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKLAFTEWIEPP
KRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRK
TIGYKVPRNPDLPNAAQAQKEEQLKIDEAEPLNDEELEEKEKLLTQGFTNWNKRDFNQFI
KANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRR
ISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELR
QCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSSAQ
KRKMDGTPDGRGRKKKLKL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgggcagccgccgcggccggacgagccgcccgcgccgccgctgccgccgggt
gccaacaccggcgaggccgcggggacggggccgccctgcgccgccggcctggccgggggc
gacgcgaagatggaggagccttttgatgatacgtctctggcaaagcaaaaagaaatccag
gaaacagatcctacatatgaagagaaaatgcaaacagacagagcaaacagatttgagtat
ctattgaagcagactgagctctttgctcatttcattcagcctgctgctcagaaaactcca
acttcacctttaaaaatgaaacctggacgtccacgaataaagaaggatgagaaacagaat
ttactgtcagctggcgactatcggcaccgtagaacagagcaggaagaggacgaggagctg
ttaacagaaagttccaagacaacaaatgtctgcactcgatttgaagaatctccatcatat
gtgaaatggggaaagctgcgtgattaccagatccgaggactgaactggctcatttctctg
tatgaaaatggcatcaatggtatcctggcagatgaaatgggtcttgggaagacgctgcaa
acaatttctcttcttggctatatgaaacactacagaaacattcctggacctcacatggtg
ttagttcccaagtccactctgcagaactggatgaatgaattcaagagatgggtaccaaca
cttcgagcagtttgtttgattggtgacaaagaccagcgagctgcctttgtgagagatgtg
ttgctgcctggagaatgggatgtctgtgtaacatcatatgaaatgcttatcaaagagaag
tcagtattcaaaaagttcaactggagataccttgttatagatgaggcccacaggattaaa
aatgaaaaatctaagttatcagaaattgtgagggaattcaagactaccaaccggctgcta
ttaactggaactccacttcagaacaatttacatgaactctgggcacttcttaacttcctt
ttgccagatgtgtttaactcagctgaagattttgattcgtggtttgataccaacaactgt
ctaggggatcaaaaactggtggagcgccttcatatggtgctacgaccattccttctccgt
cgcatcaaggctgatgtggagaaaagcttgcctccaaagaaggaagttaaaatttatgtg
ggcctcagcaaaatgcagcgagaatggtatacccgaatcctgatgaaggatatagatatc
ctgaactcagctgggaagctggacaagatgagactgctgaacatcctgatgcagctacga
aaatgctgcaatcacccatacctctttgatggagcagagcctggcccaccttacacaaca
gacatgcatttggtcactaatagtggcaaaatggtagttctggacaaattgctacctaag
ttgaaagaacaaggctcaagggttctaatcttcagtcagatgacaagagtcctagatatc
ttggaagattactgtatgtggaggaattatgaatattgcagactggatggacaaactcct
cacaatgagcgacaggcttccattaatgcattcaatgatcctgacagctcaaaatttgtg
ttcatgttgagtacacgagcaggaggtcttggaatcaatctggctactgctgatgttgta
attctttatgattcagactggaatccacaagtagacctccaggctatggatcgagcacac
agaattggccagaccaagactgtccgggtgttcaggtttattacagacaatactgtggag
gaaaggatagtggagcgtgcagaaatgaaactccgcctggattccatagtcatccagcaa
ggaagattggtggatcaaaacctgaataaacttgggaaggatgaaatgctgcaaatgatc
agacatggagcgacacatgtgtttgcctcaaaggatagtgagattacagatgaagatatt
gatcacattttggaaagaggggcaaagaagactgcggaaatgaacgaaaaactttcaaag
atgggtgaaagctcccttaggaattttactatggatactgaatctagcgtgtataatttt
gaaggggaagactacagagaaaaacagaagttggcatttacagagtggattgagccacct
aaaagagaaagaaaagccaattatgctgtggatgcttacttcagagaggctcttcgagtc
agtgaaccaaaagcacccaaggctccacggcctccaaaacagccaaatgtacaggacttc
cagttctttcctcctcgcctgtttgaactattggaaaaagagattctctactataggaaa
acaattggttacaaggtacctcgtaatcctgatctcccaaatgcagcccaagcacaaaag
gaagagcagcttaagattgatgaggctgaacctcttaatgatgaagaactagaagaaaaa
gagaaacttctaacccagggcttcactaactggaataagagagatttcaaccagttcatc
aaagccaatgagaagtggggccgtgatgacattgaaaatatagcacgagaagtcgaagga
aaaaccccagaggaagtcattgagtattcagctgtgttctgggaaagatgcaatgaactc
caagacatagagaagatcatggctcagatcgaaagaggagaagccagaatacagagacga
atcagcataaaaaaggctcttgatacaaagattgggagatataaagcccctttccaccaa
ctaagaatatcctatggtactaataaagggaagaattacactgaagaggaggatcgcttc
ctaatctgtatgcttcacaaactaggatttgataaagaaaatgtctatgatgaattaaga
caatgtatccgaaactcgccgcaattcagatttgactggtttctcaagtccagaactgca
atggaactgcaaaggaggtgtaatactttaatcactctaattgaaagagaaaacatggaa
ctggaagaaaaggaaaaggcagaaaagaagaaacgtggaccaaaaccatcttcggcacag
aagcgcaaaatggatggcactcctgatgggcgtgggagaaaaaagaagctaaagctgtga
DBGET
integrated database retrieval system
