Lonchura striata (white-rumped munia): 110468892
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Entry
110468892 CDS
T05897
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110468892 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110468892 (TAF5L)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110468892 (TAF5L)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110468892 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
110468892 (TAF5L)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
110468892 (TAF5L)
STAGA complex
110468892 (TAF5L)
TFTC complex
110468892 (TAF5L)
SAGA complex
110468892 (TAF5L)
SLIK complex
110468892 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
TFIID_NTD2
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WD40_RFWD3
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Ge1_WD40
eIF2A
Nbas_N
Motif
Other DBs
NCBI-GeneID:
110468892
NCBI-ProteinID:
XP_021382813
LinkDB
All DBs
Position
3:42001263..42020477
Genome browser
AA seq
602 aa
AA seq
DB search
MSPCCWLKCRRMVMKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLT
VQSESGCANVVSAAPCLAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNM
VQNGLKSTVDSFYSRFHGMFLQNASQKDIIEQLQTTMTIQDILSNLKLRAFLDNKYVIRL
QEDSYNYLLRYLQSDNNNALCKVLTLHIHLDVQPAKRTDYQLYAGGSSSRNESNGLEPSD
VPASILQNEAALDLLQDSIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPNSKLLAAGF
DNSCVKLWSLRSRKLKSEPHLVDVSRIRLACDILDEEEEEDDNAGTEMKILRGHCGPVYS
TRFLSDSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPCSLYFASGSHDRT
ARLWSFDRTYPLRIYAGHLADVDCIKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGH
RGPVLALAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIAS
ASMDNSVRVWDIRNTYCNAPADGSSSELVGVYTGQMNNVLSVQFMACNLLLVTGIAQENQ
EH
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagtccatgctgttggctgaaatgcagaagaatggtcatgaaacgcgtacgcacagaa
cagattcagatggcagtgtcctgctacctcaagcgccgtcagtatgtggactcagaaggt
cccctaaaacaagggctgaggctgtgtcagactgctgaagagatggcagctaatctcaca
gtccaatctgagtctggttgtgccaacgtcgtgtctgcagctccctgcctggcggagcca
cagcaatatgaagtacagtttggaagattacgcaattttctgacagattcagattctcag
cacagccatgaagtgatgcctcttctgtatcccctcttcgtctacctccatctgaacatg
gtccagaatggcctaaaaagcacagtggacagtttttacagccgcttccatggcatgttc
ttgcagaatgccagccagaaggatatcattgaacagttgcagactaccatgactattcaa
gatatcctgtccaacttgaagctccgggcctttctggacaacaaatatgtcatccgcctt
caagaggacagctacaactaccttcttcgctacctccaaagtgacaacaacaacgccctg
tgcaaagtcttgaccttgcacattcacttggatgtgcagcctgccaagaggactgactac
cagctctatgctggtgggagctcctcacgcaacgagagcaacggcctggaacccagtgat
gtgccagcttccattctgcagaatgaggcagcgctggatttactgcaggacagcattaaa
cgtgtcaaggatgggcccccttccttaaccaccatctgtttctatgccttctataacaca
gagcagttgctgaacactgcagagatttcaccaaatagcaagctgcttgctgctgggttt
gataattcatgtgtgaagctgtggagcctgcgctccaggaagttgaaatctgagccccac
cttgttgatgtatcccgcatccgtttggcttgtgacatcctagatgaggaggaggaagag
gatgacaacgcaggcacggaaatgaagatcctgagaggacactgtggacctgtgtatagc
acaaggttcctttcagacagttcaggactcttatcttgttctgaggacatgtccatcagg
tactgggacctcggaagctttacaaacactgtgttgtaccaaggacatgcctatcctgtc
tgggatttggatattagcccctgcagcctgtactttgccagcggttcccacgatcgcact
gcaaggctctggtcgtttgatcggacgtacccactgcgaatatacgcgggccatttggcg
gacgtggactgcatcaagttccaccccaattccaactacttagcaacgggctccacggac
aaaaccgtgcgcctgtggagcactcagcagggcaactcagtgcggcttttcaccgggcac
cggggccctgtgctggcactcgcgttttcccccaacggtaagtacctggcatcagcaggt
gaagaccagcggctgaagctgtgggacttggcatcaggaactctttacaaagaactgagg
gggcacacagacaacataaccagtcttacttttagccctgacagtagtttaattgcttca
gcatcgatggacaattcagttcgggtctgggacattcggaacacttactgcaacgctcct
gcagatgggtcttccagtgaactggttggtgtatataccggacagatgaataatgtactg
agtgtacagtttatggcctgtaatcttcttctagtgactggaattgcacaagaaaatcag
gaacattaa
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