Lonchura striata (white-rumped munia): 110468962
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Entry
110468962 CDS
T05897
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110468962 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsr03041
]
110468962 (PRPF6)
Spliceosome [BR:
lsr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110468962 (PRPF6)
Complex C
U5 SnRNP specific factors
110468962 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
ARM_TT21_2nd
FAT
TPR_CcmH_CycH
TPR_1
T7SS_EccA1_N
ARM_TT21_C
ARM_TT21_5th
TPR_21
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
110468962
NCBI-ProteinID:
XP_021382970
UniProt:
A0A218US31
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Position
20:2733351..2758868
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AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQSGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALKHYEDFPKLWMMKGQIEE
QKELVEKAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPDLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCDVSKDIENWQKKIGEILVLVAAKLKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcctgggcatgcccgcgcccctgggctacgtgccgggg
ctgggccgcggagccacgggcttcaccacgcgctccgacatcggccctgcccgcgatgcc
aacgaccccgtggacgaccggcacgccccgccgggcaagagaaccgtgggcgaccagatg
aagaagaaccagaccgcagatgatgatgatgaggatttgaatgacaccaactacgatgag
ttcaatggctatgctgggagcctgttctcaagtggcccctatgaaaaagatgatgaagaa
gcagatgctatttatgcagctttggacaagaggatggatgaacgcaggaaagaaaggagg
gaacaacgagaaaaagaggaaatagaaaagtaccgtatggaacggcccaaaattcaacag
cagttctcagacttgaaacggaaattagcggaggtcactgaggaggagtggctgagcatt
cctgaggttggggatgccaggaacaagaggcagaggaatcctcgttatgagaagctgact
cctgtccctgacagcttctttgcaaagcatttgcagtcaggggagaatcacacttcggtg
gacccacgccagacccaatttggtggactgaatactccatatccagggggtttgaatact
ccatacccaggaggaatgacaccaggcttgatgacacctgggacaggtgaattggatatg
aggaagattggtcaagccagaaacaccttgatggatatgaggctaagccaggtgtcggac
tctgtgagtggccagactgtagtggacccaaaaggatatttgacagacttgaattccatg
attcccacacacggaggagatatcaatgatatcaaaaaagcccgtttgctcctgaaatct
gtccgagagaccaatcctcatcatccaccagcctggatagcatctgcccgactggaagag
gtcactggcaaactccaggtggctcgaaacctcatcatgaaaggaacagagatgtgccct
aagagtgaagatgtttggttggaagctgctcggcttcagcctggagatacagccaaggct
gttgtggcccaggctgtgcggcacctgccacagtctgtgcggatctatatcagagcagca
gagctggagacagacatccgtgccaagaaacgtgtccttaggaaagcccttgagcatgtt
ccaaactcggtgcgtttgtggaaagcagccgtggagctggaggaacctgaggatgccagg
atcatgctgagccgggctgtggagtgctgtccaaccagtgttgaactgtggctggcgctg
gcaaggctggagacatatgagaacgctcgtaaagtccttaacaaagcccgggagaatatc
ccgacggatcgtcacatctggatcactgctgccaaactggaggaagccaatggaaacacc
cagatggtggagaaaatcattgacagagccatcacatctcttagggctaacggggtggaa
atcaacagggagcagtggattcaggatgccgaggaatgtgataaagctggaagtgtggcc
acatgccaggcaatcatgagagctgtgattgggattgggatcgaggaagaagatcggaaa
cacacctggatggaagatgcagacagttgtgttgctcataacgccctggagtgtgcccga
gccatttatgcctatgccttgcaagtcttcccgagcaagaagagtgtgtggctgcgagca
gcctactttgaaaagaaccatggaaccagagaatccttggaggctcttttgcagagagct
gttgctcactgtcccaaagcagaggtgctgtggctcatgggagccaaatccaagtggctg
gcaggagatgtgccagcagccagaagcatcttggccctggctttccaggccaaccccaac
agcgaggagatctggctggctgccgtgaagctcgagtcggagaacaatgagtatgaaaga
gcgaggaggctgctggcaaaggctcgcagcagtgcccccacagcaagggtcttcatgaag
tctgtgaagttggagtgggtgcttgggaacattgctgcagcccaggagctctgtgaggaa
gccctgaaacactatgaggacttccccaaattgtggatgatgaaaggacaaattgaggaa
caaaaagagctggtagagaaagcacgggaggcttataatcaagggttgaagaagtgcccc
cattccatacccctgtggcttttgctgtccaggctggaggagaaagttgggcagctgact
agagcaagagccatcttggaaaagtctcgcctgaagaatccaaagaatccagatctctgg
ttggagtctgtgcgcttggagtaccgagctgggctgaagaacattgcaaacacactgatg
gccaaggcactgcaagagtgccccaattcaggaatcctgtggtcagaagcaattttcctt
gaagcgcgaccgcaacgaaagaccaagagtgtggatgctctcaagaagtgtgaacatgac
ccacatgtcttgctggctgtggccaagctgttctggagcgagcggaaaataaccaaggcc
agagagtggttccaccgcacagtgaagatagactctgacctgggggatgcctgggccttc
ttttacaaatttgagctccagcatggcacagaggaacaacaagaagaggtgaggaagcgc
tgtgagaatgctgaacctcgccacggagagctctggtgtgatgtctccaaggacatagag
aactggcagaaaaagattggagagattcttgtgcttgtggcagccaagctgaaaaatacc
ttctag
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