KEGG   Lonchura striata (white-rumped munia): 110468962
Entry
110468962         CDS       T05897                                 
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
  KO
K12855  pre-mRNA-processing factor 6
Organism
lsr  Lonchura striata (white-rumped munia)
Pathway
lsr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110468962 (PRPF6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsr03041]
    110468962 (PRPF6)
Spliceosome [BR:lsr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    110468962 (PRPF6)
 Complex C
   U5 SnRNP specific factors
    110468962 (PRPF6)
SSDB
Motif
Pfam: PRP1_N TPR_14 TPR_19 HAT_PRP39_N TPR_16 Suf HAT_PRP39_C HAT_Syf1_CNRKL1_N HAT_Syf1_CNRKL1_C TPR_17 TPR_2 TPR_8 ARM_TT21_2nd FAT TPR_CcmH_CycH TPR_1 T7SS_EccA1_N ARM_TT21_C ARM_TT21_5th TPR_21 MUM1-like_PWWP
Other DBs
NCBI-GeneID: 110468962
NCBI-ProteinID: XP_021382970
UniProt: A0A218US31
LinkDB
Position
20:2733351..2758868
AA seq 941 aa
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQSGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALKHYEDFPKLWMMKGQIEE
QKELVEKAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPDLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCDVSKDIENWQKKIGEILVLVAAKLKNTF
NT seq 2826 nt   +upstreamnt  +downstreamnt
atgaacaagaagaagaagccgttcctgggcatgcccgcgcccctgggctacgtgccgggg
ctgggccgcggagccacgggcttcaccacgcgctccgacatcggccctgcccgcgatgcc
aacgaccccgtggacgaccggcacgccccgccgggcaagagaaccgtgggcgaccagatg
aagaagaaccagaccgcagatgatgatgatgaggatttgaatgacaccaactacgatgag
ttcaatggctatgctgggagcctgttctcaagtggcccctatgaaaaagatgatgaagaa
gcagatgctatttatgcagctttggacaagaggatggatgaacgcaggaaagaaaggagg
gaacaacgagaaaaagaggaaatagaaaagtaccgtatggaacggcccaaaattcaacag
cagttctcagacttgaaacggaaattagcggaggtcactgaggaggagtggctgagcatt
cctgaggttggggatgccaggaacaagaggcagaggaatcctcgttatgagaagctgact
cctgtccctgacagcttctttgcaaagcatttgcagtcaggggagaatcacacttcggtg
gacccacgccagacccaatttggtggactgaatactccatatccagggggtttgaatact
ccatacccaggaggaatgacaccaggcttgatgacacctgggacaggtgaattggatatg
aggaagattggtcaagccagaaacaccttgatggatatgaggctaagccaggtgtcggac
tctgtgagtggccagactgtagtggacccaaaaggatatttgacagacttgaattccatg
attcccacacacggaggagatatcaatgatatcaaaaaagcccgtttgctcctgaaatct
gtccgagagaccaatcctcatcatccaccagcctggatagcatctgcccgactggaagag
gtcactggcaaactccaggtggctcgaaacctcatcatgaaaggaacagagatgtgccct
aagagtgaagatgtttggttggaagctgctcggcttcagcctggagatacagccaaggct
gttgtggcccaggctgtgcggcacctgccacagtctgtgcggatctatatcagagcagca
gagctggagacagacatccgtgccaagaaacgtgtccttaggaaagcccttgagcatgtt
ccaaactcggtgcgtttgtggaaagcagccgtggagctggaggaacctgaggatgccagg
atcatgctgagccgggctgtggagtgctgtccaaccagtgttgaactgtggctggcgctg
gcaaggctggagacatatgagaacgctcgtaaagtccttaacaaagcccgggagaatatc
ccgacggatcgtcacatctggatcactgctgccaaactggaggaagccaatggaaacacc
cagatggtggagaaaatcattgacagagccatcacatctcttagggctaacggggtggaa
atcaacagggagcagtggattcaggatgccgaggaatgtgataaagctggaagtgtggcc
acatgccaggcaatcatgagagctgtgattgggattgggatcgaggaagaagatcggaaa
cacacctggatggaagatgcagacagttgtgttgctcataacgccctggagtgtgcccga
gccatttatgcctatgccttgcaagtcttcccgagcaagaagagtgtgtggctgcgagca
gcctactttgaaaagaaccatggaaccagagaatccttggaggctcttttgcagagagct
gttgctcactgtcccaaagcagaggtgctgtggctcatgggagccaaatccaagtggctg
gcaggagatgtgccagcagccagaagcatcttggccctggctttccaggccaaccccaac
agcgaggagatctggctggctgccgtgaagctcgagtcggagaacaatgagtatgaaaga
gcgaggaggctgctggcaaaggctcgcagcagtgcccccacagcaagggtcttcatgaag
tctgtgaagttggagtgggtgcttgggaacattgctgcagcccaggagctctgtgaggaa
gccctgaaacactatgaggacttccccaaattgtggatgatgaaaggacaaattgaggaa
caaaaagagctggtagagaaagcacgggaggcttataatcaagggttgaagaagtgcccc
cattccatacccctgtggcttttgctgtccaggctggaggagaaagttgggcagctgact
agagcaagagccatcttggaaaagtctcgcctgaagaatccaaagaatccagatctctgg
ttggagtctgtgcgcttggagtaccgagctgggctgaagaacattgcaaacacactgatg
gccaaggcactgcaagagtgccccaattcaggaatcctgtggtcagaagcaattttcctt
gaagcgcgaccgcaacgaaagaccaagagtgtggatgctctcaagaagtgtgaacatgac
ccacatgtcttgctggctgtggccaagctgttctggagcgagcggaaaataaccaaggcc
agagagtggttccaccgcacagtgaagatagactctgacctgggggatgcctgggccttc
ttttacaaatttgagctccagcatggcacagaggaacaacaagaagaggtgaggaagcgc
tgtgagaatgctgaacctcgccacggagagctctggtgtgatgtctccaaggacatagag
aactggcagaaaaagattggagagattcttgtgcttgtggcagccaagctgaaaaatacc
ttctag

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