Lonchura striata (white-rumped munia): 110469928
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Entry
110469928 CDS
T05897
Symbol
DCAF1
Name
(RefSeq) DDB1- and CUL4-associated factor 1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lsr01001
]
110469928 (DCAF1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110469928 (DCAF1)
Enzymes [BR:
lsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
110469928 (DCAF1)
Protein kinases [BR:
lsr01001
]
Serine/threonine kinases: Other
Other
110469928 (DCAF1)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
110469928 (DCAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
ANAPC4_WD40
LisH
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
110469928
NCBI-ProteinID:
XP_021384836
LinkDB
All DBs
Position
12:4149610..4196206
Genome browser
AA seq
1504 aa
AA seq
DB search
MTSGSGHVDSKAELTTLLEQWEKEHGSGQDMVPILTRMSELIEKETEEYRKGDPDPFDDR
HPGRADPECMLGHLLRILFKNDDFMNALVNAYVMTSREPPLNTAACRLLLDIMPGLETAV
VFQEKEGIVENLFKWAREADQPLRTYATGLLGGAMENQDIAANYRDENSQLVALVLRRLR
ELQVTEMTTKQENKRPSPRKVPSDPLLPLDEEAVDMDYGEMTVDGEQEVSGDMEISFHLD
SSHKTSSRVNSATKLEDGGLRKSRSGKQHERDGFRKAKQKLGFSTSEPERIFVELSNSSW
SEMSPWVIGTNYTLYPLTPAIEQRLILQYLTPLGEYQELLPIFMQLGSRELMMYYIDLKR
TSDVLLTFEALKHLASLLLHNKFATEFVAHGGVQKLLEIPRPSMAATGVSMCLYYLSYNQ
DAMERVCMHPHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRHDGLR
RLVNLISTLEILNLEDQGALLSDDEIFASRQTGKHTCMALRRYFEAHLAIKLEQVKQSLQ
RTEGGILVHPQPPYKACSYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLKLSCVQLMLQLI
SIACNWKTYYARNDTVRYALDVLAILTVVPKIQLQLAEPVDVLDEAGSTVSTVGISIILG
VAEGEFFIHDAEIQKSALQIIINCVCGPDNRISSIGKFISGTPRRKLPQAPKSSEHTLAK
MWNVVQSNNGIKVLLSLLSVKMPITDADQIRALACKALVGLSRSSTVRQIISKLPLFSSC
QIQQLMKEPVLQDKRSEHVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQSRIT
FPEKELLLLIRNHLISKGLGETASVLTKEADLPMTAASHSSAFTPVAAAASPVTLPRTPR
IANGISARLSSHTAVGSTATSVHAQARPSASQGPPALPGPSYASNSPLIGRISFVRERPS
PCNGRKIRVLRQKSDHGAYSQSPAIKKQLDRHLPSPPTLDSIITEYLREQHARCKNPVAT
CPPFSLFTPHQCPEPKQRRQAPTNFTSRLTRRAAFPKYGGVDGGCFDRHLIFSRFRPISV
FREANEDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAITHLEPSR
DGSLLLTSATWSQPLSALWGMKSVFDMKHSFPDDHYVEFSKHSQDRVIGTKGDIAHIYDI
QTGNKLLTLFNPDLANNYKKNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMTISGV
FHPNGLEVIVNTEIWDLRTFHLLHTVPALDQCRVVFNYTGTVMYGAMLQADDEDDLLEER
MRSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTDSKDCYLAVIENQGSMDAMNMDTVCR
LYEVGRQRLAEDEEDEEEDQEEEEQEEEDDDEDDDDTDDLDELDTDQLLEAELEEDENNE
NAGEDGENDFSPSDDEEIANLLEEGDEGEDEDSDADEEVELILGDTDSSDNSDLEDDIIL
SLNE
NT seq
4515 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaggatctgggcatgtggactccaaggctgagctcaccactttgcttgagcag
tgggagaaagaacatggcagcgggcaagacatggtccctattctcaccagaatgtccgag
ctgattgagaaggagactgaagagtaccgtaaaggggacccagacccgtttgatgaccga
cacccaggtcgggcagatccggagtgcatgcttggtcacttactgaggatactcttcaag
aatgatgatttcatgaacgcgctagtgaatgcttatgtgatgacaagcagagaacctcca
ctaaacactgctgcctgcagacttctgctggacatcatgccgggactggaaacagctgtt
gtgtttcaggaaaaggaaggcatagttgaaaatctctttaagtgggcacgagaggctgat
cagccactaagaacgtatgcaacaggactgttgggaggagctatggaaaaccaggacatt
gctgcaaattacagggatgagaactcccaactggtggctctggtgcttcgtcggctgcga
gagttgcaggtcactgaaatgaccacaaaacaggaaaacaagcgccccagtcctcggaaa
gtgccatcagatcctctgctgcccctcgatgaggaggctgtggatatggattatggggag
atgacagtagatggagagcaagaagtttctggtgatatggagatctcctttcatcttgat
tcaagtcataagacgagtagcagagtaaactctgctacaaagctagaggatgggggactg
agaaaaagcagatcagggaagcagcatgaaagagatggctttcggaaggccaagcaaaag
ctgggcttctccacctcagaaccggagaggatatttgttgagctgtccaacagcagctgg
tcagaaatgtccccgtgggtcattggcactaattacacactttaccccttgactcctgcc
atagagcagaggctgattcttcagtacctgactcccttgggggagtaccaagagctgcta
cccatctttatgcaactggggtcaagggagctgatgatgtactacattgacttgaagcga
accagcgatgtgctcctcacttttgaagcccttaagcatttggcatcattgctgctgcac
aacaagtttgctacagagtttgttgctcatggaggagtgcagaagttgctggagattcct
cgtccttccatggcagcaacaggagtgtccatgtgtttgtattacttgtcatacaatcaa
gatgctatggagagggtgtgcatgcacccccataatgtgctttcagatgtagtgaactac
accctgtggctgatggagtgctcccacgcctcaggctgctgccatgccaccatgttcttc
tccatttgcttctctttccgtgctgtcctggagctctttgataggcacgatgggctgcga
cgtctggttaacctgataagcactctggagatcttaaacctggaagaccaaggagccctc
ctgagcgatgatgagatctttgccagtcgccagacggggaagcacacctgcatggcgctg
cgccggtacttcgaggctcaccttgccatcaaactggagcaggtgaagcaatcactgcag
cgcactgagggcggcatcctggtgcatccacagcccccctacaaggcctgctcctatact
catgagcagattgtggagatgatggagttcctgattgagtatggtccagcacagctttac
tgggagccagcagaggtttttctcaagctgtcttgtgtccagctcatgcttcagctcatt
tccattgcctgcaactggaagacgtactatgcaaggaatgacacagtacgatatgctttg
gatgtactggccatcttgactgtagtacctaaaatccagttgcaactggcagaacctgtg
gatgtgttagatgaagctggatctactgtttccactgtgggtattagtatcatccttggg
gttgctgagggtgagtttttcatccatgatgctgagattcagaaatcagctcttcagatc
atcatcaactgtgtgtgtggcccagataaccggatctccagcatcgggaaattcatctct
gggactcctcgtcgaaagcttcctcaggcccccaagagcagtgagcacacgttagccaag
atgtggaatgtggtgcagtccaacaatggcatcaaggtgctgctgtcgttgctgtctgtg
aagatgccgatcaccgacgcggatcagatccgggctctggcctgcaaagccctggtgggg
ctgtcgcgcagcagcaccgtccggcagatcatcagcaagctgcccctgttcagcagctgc
cagatccagcagctgatgaaggagccggtgctgcaggacaagcgcagcgagcacgtgaag
ttctgtaagtacgctgccgagctcatcgagcgcgtctcggggaagcccctgctcatcggc
acagacgtctcgctggcgcggctgcagaaggctgatgtggtggcccagtcgaggatcact
tttcctgagaaggagctgctgctgctgattcggaaccatctcatctctaagggcctcggg
gaaacggcgtctgttcttacgaaagaggctgacctgcccatgactgcagcatcccactct
tctgccttcacccctgttgcagccgctgcctctccggtgactctgcctcgcactcctcgt
atagctaacggcatctcggcccgtttgagtagccacactgctgtgggttccactgccacc
tctgtccacgctcaggcaagaccgtctgcatcccaaggtccacctgcccttccaggccct
tcttatgccagcaactctcctctgattggcaggattagctttgtcagggagaggccgtct
ccctgcaacggcaggaaaatcagagtgttgcgacaaaaatcggaccatggcgcctacagc
cagagcccagctatcaaaaagcagctggacagacaccttccttccccacccacgctggac
agtataatcacagagtaccttagggagcagcatgcccgctgcaagaaccctgttgccacc
tgtccccctttctctctctttactccccaccagtgtcctgagccaaaacagaggcgccag
gcgcccactaactttacctcacggctgacccgcagggcggcctttccgaagtatggaggg
gtggatggtggctgctttgatagacaccttatattcagcaggttccgtccaatttctgtg
ttcagggaagcaaatgaggatgagagtggctttacctgttgtgcattttctgcaagagag
cgattcttaatgctgggtacttgcacggggcagttgaaactctacaacgtgttcagtgga
caggaagaggccagttacaactgccataactctgccatcacgcaccttgagccatccagg
gatggatctttattgctgacatctgctacatggagccaacctctgtctgcattgtgggga
atgaagtctgtctttgatatgaagcattccttccctgatgaccactatgtggagttcagc
aagcactctcaggaccgggtcattggcacaaagggagacattgcacatatctatgatatt
cagactggcaacaagctattgactctgtttaacccagatcttgccaacaactacaagaag
aactgtgccacctttaaccccactgacgaccttgtcctaaatgatggtgtcctctgggat
gtcagatcagcacaagccatccacaagtttgacaaattcaacatgactatcagtggtgtt
ttccatcccaatgggctggaggtcatagtcaacactgaaatttgggacctccgaactttc
catttgttacacacagtacctgcactggatcagtgtcgtgtggtcttcaactatactggc
acagtgatgtatggagctatgttgcaggcagatgatgaggatgaccttctggaggagaga
atgagaagtcccttcggctcttctttcaggacatttaatgcaactgattataaacctata
gctaccatagatgtgaagaggaatatctttgacttgtgcacagacagcaaggactgctat
ctggctgtcattgagaaccagggcagcatggatgccatgaacatggacacagtgtgcagg
ctctatgaagtgggccggcagcggctggcagaagatgaggaggatgaagaagaagatcag
gaggaagaggagcaagaagaagaagatgatgatgaagatgatgatgacacagatgacctt
gatgaactagatacagaccagctgctggaggctgagctggaggaggatgagaacaatgag
aatgctggtgaggatggagaaaatgacttttctccctccgatgatgaggagattgccaac
ctcctggaagagggagatgaaggtgaagatgaagattctgatgctgatgaggaagttgag
ctgattcttggagatactgacagctccgataactccgacctggaggacgacatcatcctg
tccctgaatgagtga
DBGET
integrated database retrieval system
