Lonchura striata (white-rumped munia): 110470111
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Entry
110470111 CDS
T05897
Symbol
COPB1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsr04131
]
110470111 (COPB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsr04147
]
110470111 (COPB1)
Membrane trafficking [BR:
lsr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
110470111 (COPB1)
Exosome [BR:
lsr04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
110470111 (COPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatomer_b_Cpla
Coatamer_beta_C
HEAT
HEAT_2
Cnd1
HEAT_EZ
Arm
MMS19_N
AP4E_app_platf
Motif
Other DBs
NCBI-GeneID:
110470111
NCBI-ProteinID:
XP_021385182
UniProt:
A0A218UQ64
LinkDB
All DBs
Position
5:50286498..50304908
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AA seq
953 aa
AA seq
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MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKLKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLQEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI
VLDRLIELKEHPSHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVTEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDNNEAAAADV
LEFVREAIQRFENLRPLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVR
RSLGEIPIVESEIKKEAGELKPEEEVPVGPAQKLVTEMGTYATQSALSSSRPAKKEEDRP
PLRGFLLDGDFFVAASLATTLTKIALRYVSLVQEKKKQNSFNAEAMLLMATILHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEK
RNVTIQPDDPISFMQLTAKNEMSSKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNVVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEF
RQMWAEFEWENKVTVNTNIIDLNEYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSI
FGEDALANVSIEKPIHLGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKTSL
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgcagagaacgtgtgttacacgttgatcaatgttcccatggattcagagcca
ccttctgaaatcagcttaaaaaatgacctagaaaaaggagatgtgaagttgaagacagag
gccttgaagaaagtaatcattatgattctgaatggtgagaagctgcctgggctcctgatg
accatcatacgctttgtgctgcctctccaagaccataccatcaaaaagctgctgctcgtc
ttttgggagatcgtgccaaagaccactccagatggcaggctcctgcaggaaatgatcctc
gtgtgtgatgcatacagaaaggacctccagcacccaaatgagtttatccgaggctccacc
ctgcgctttctctgcaagctgaaggaagcagagctgctggagcccttgatgccggccatc
cgtgcgtgcctggagcaccggcacagctacgtgcgccgcaacgccgtgctggccatttac
accatctacaggaactttgaacatcttatacctgatgctcctgaactgatccatgatttc
ttggtgaatgagaaagatgcaagctgcaaaagaaatgcatttatgatgcttattcatgca
gatcaggaccgagctttggattatttgagtacctgtattgaccaagtgcagacctttggt
gacatactgcagttggttattgttgaactaatttacaaggtctgtcacgcgaatccatcg
gagagagctcggttcattcgctgcatctacaacctgctgcagtcctcaagtcctgcagtg
aagtatgaggctgcaggtactctggttacactctccagtgcacccacagcaatcaaggct
gctgcccaatgctacatagatttgattattaaagaaagtgataataatgtgaaactgatt
gtcttggatcggttgattgagctgaaggagcatccttcccacgaacgagtgttgcaggat
ctagttatggacatcctcagagtgttgagcaccccagatctagaagtgcgcaaaaaaacc
cttcagctggctctggatcttgtgtcttcaagaaatgtggaggagcttgtgattgttctg
aagaaggaagtgattaaaactaataatgtgacagagcatgaagacacagacaagtacaga
cagctcctggttcggacgctgcattcctgtagtgttcgcttcccagacatggctgcaaat
gttattccagtgctgatggaattccttagcgataacaatgaagcggcagctgctgatgtc
ctggagtttgtgcgggaagcgatccagagatttgaaaacctcagacctcttattgttgag
aagatgcttgaagtctttcatgctattaaatctgtcaagatttatcgaggagcattatgg
atccttggagaatattgcagcacaaaggaggatatacaaagtgtaatgacagaggttcgc
agatcactaggagagatcccaatagtagaatctgaaatcaagaaagaagctggtgaactc
aaacctgaagaagaggttcctgtgggtccagcccaaaaattagtgacagagatgggcact
tatgcaacacagagcgctcttagcagttcccgacctgccaaaaaggaagaagacagacct
cccttacgaggattcctgctggatggagatttctttgttgcagcttcccttgctacaact
ttaaccaagattgctttacgttatgtgtccctagttcaggaaaagaagaaacaaaattcc
tttaatgctgaagctatgctgctgatggccactattctccacttgggaaagtcttctctt
cccaagaagccaattacagatgatgatgtggatcgtatttcgttgtgtctgaaagtgttg
tcagaatgttctcctctcatgaatgacattttcaacaaagaatgcaggcagtccctctct
cacatgctgtcagccaagctagaagaggagaaactttcccaaaagaaagaatctgagaag
aggaatgtgacaattcagccagatgatcccatttccttcatgcagctaactgctaaaaat
gaaatgagctcaaaagaagaccagttccagcttagccttcttgcagcaatgggaaacaca
cagaggaaagaggctgctgatcctcttgcttccaagcttaataaggtcactcagctgaca
ggtttctcagaccctgtgtatgcagaagcctatgtccatgtcaatcagtatgacattgtg
ctggatgtgctcgtggtcaaccagaccagtgacaccctgcagaactgcaccctggagctg
gccacgctgggtgacttgaaacttgtggaaaaaccatctcctctgacacttgctccacat
gattttgcaaacattaaagctaatgtcaaagtcgcttcaacagaaaatggaataattttt
ggtaatgttgtgtatgatgtctctggagctgccagcgacagaaactgtgtggttctcagt
gacattcacattgatatcatggattacatccagcctgcttcctgtacagatgctgagttc
agacagatgtgggcagaatttgaatgggaaaacaaagtaacagtgaatacaaatatcatt
gatttaaacgaatacttacagcacatactgaagtcaaccaatatgaaatgcctgactcca
gagaaggccctttcaggctactgtggctttatggcagccaatctgtacgcccgttccata
ttcggagaagacgccctggccaacgtgagcattgagaagccgattcacctggggccagag
gcgcctgtcacaggccacatacggatccgggccaagagccagggaatggccctgagcctt
ggagataagatcaatctgtctcagaagaagacaagtttataa
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