Lonchura striata (white-rumped munia): 110470437
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Entry
110470437 CDS
T05897
Symbol
VPS11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04140
Autophagy - animal
lsr04148
Efferocytosis
lsr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110470437 (VPS11)
04148 Efferocytosis
110470437 (VPS11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
110470437 (VPS11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsr04131
]
110470437 (VPS11)
Membrane trafficking [BR:
lsr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
110470437 (VPS11)
Hops complex
110470437 (VPS11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3H2C3
TPR_GEMI5
zf-RING_5
zf-RING_UBOX
zf-RING_11
zf-ANAPC11
zf-RING-like
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
110470437
NCBI-ProteinID:
XP_021385750
LinkDB
All DBs
Position
24:complement(41391..51434)
Genome browser
AA seq
929 aa
AA seq
DB search
MAAYLQWRRFVFFDRETVREPSAPDGAAAKPFALPPGIAVCDSGRGSLVFGDMEGQIWFL
PRSLQLSSFQAYKLRVTHLYQLKQHSILVSIGEDEEGINPLVKVWNLEKRDGGNPLCTRI
FPAIPGNKPTVVSCLTVHENLNFMAIGFADGSVVLTKGDITRDRHSKTQILHEGSYPVTG
LAFRQSGKTTHLFVVTTENIQSYMLSVKDYPRLELDTHGCGLRCSSLSDPSQDLQFIVAG
NECVYLYQPDERGPCFAFEGQKLIVHWYRGYLIIVSKDRKTSPKSEFAGNEAQNSDKQVL
NIYDLCNKFIAYNSIFDDIVDVLAEWGSLYVLTRDGKIHVLQEKDTQTKLEMLFRKNLFE
MAINLAKSHHLDSDGLSEIFRQYGDHLYNKGNHDGAIQQYIRTIGKLEPSYVIRKFLDAQ
RIHNLTAYLQMLHLQSLANADHTTLLLNCYTKLKDSSKLEEFIKTSESEVHFDVETAIKV
LRQAGYYSHAVYLAEKHEHHEWYLKIQLEDIKNYQEALHYIGKLPFEQAESNMKRYGKIL
MHHVPNETTELLKILCTDYHPSGGNECPGMLEGKKANSEEFIPIFANNSRELKAFLEHMT
EVQADSPQGVYDTLLELRLQNWAHEQDEQTKEKLHDEALTLLKSGRFKTVFDKALVLCQM
HNFKDGVLYLYEQGKLFQQIMHYHMQNEQYKKVIEVCELYGDQEACLWEQALSYFARKEE
NCKEYIAAVLKHIENKNLMPPLLVVQTLAHNSTATLSVIKDYLVNKLQKQSQQIQQDEQR
IQKYREETTRIRLEIEELKESPKIFQKTKCSICTGALELPSVHFLCGHSFHQHCFESYSE
SDSECPTCMPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDGFSVVADYFGRGVFNKLTL
ITDLPSGKTATTIEAGLQRELLIHSKRST
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgtacctgcagtggcgccggttcgtcttcttcgacagggagacggtgagggag
ccgtcggcgcccgatggagccgctgcgaagcctttcgcactgcccccgggcatcgcggtc
tgcgactcgggccggggaagcctcgtgttcggagatatggaaggtcagatttggtttttg
cctcgctcccttcaactcagcagtttccaagcttacaagctaagggtgacacatctgtac
cagctgaagcagcacagtatcctggtttctattggtgaggatgaagaaggtataaatcct
ttggtgaaagtctggaacctggagaaacgagatggtggtaatcctctttgcacaagaatt
tttccagcaataccaggtaacaagcccacggttgtgtcctgcctaactgtccacgagaat
cttaatttcatggctatcggttttgcagatgggagtgttgtacttactaaaggagacatc
actcgggatcggcatagtaagacccagatcctacatgaaggtagttaccccgttactggc
cttgcttttcgacagtctggcaaaacaacacatctatttgtggtgaccacagagaacatc
cagtcttatatgctttcagtgaaagactatcctcgcctggagctggacactcacggttgt
ggattgcgctgttcgtctctcagtgacccctcccaggatctccagttcattgtggcagga
aatgaatgtgtgtacctttaccaaccagatgaacgtggcccctgctttgccttcgaggga
caaaagctgattgttcactggtatcgggggtacctcatcattgtctccaaggaccgaaag
acttccccgaaatcagaatttgctgggaatgaggcacagaattcagacaaacaagtcctg
aatatctatgacttgtgcaacaaattcattgcatacaactcaatctttgatgatatagtg
gatgttctggcagagtggggatctctctatgtactgaccagagatgggaagatccacgta
ctgcaggagaaggatacacaaaccaaactcgagatgctgttcagaaagaacttatttgaa
atggccattaacctggccaagagccaccacttggacagcgatggtttgtcagagattttc
cggcagtatggcgatcatctctataacaagggaaaccatgatggagccatccagcagtat
atccgaactatagggaagctagaaccatcgtatgttattcggaaattcctggatgctcag
cgtatccacaaccttactgcttatctacagatgctccatctgcagtccctggccaatgca
gaccacactacacttctgctgaattgctataccaaactcaaagacagctccaaactggaa
gagttcattaagacgagtgagagtgaggtccactttgatgtggaaacggctatcaaggtg
cttcgccaagctggttactactcccatgctgtgtacctggcagagaagcatgagcatcat
gaatggtacctcaaaatccagttagaggacatcaagaactaccaagaggcattgcactac
attggaaaactgccatttgaacaggcagagagtaacatgaagcgatatggtaaaatcctt
atgcaccatgtccctaatgagaccactgaattgctgaagatcctttgcactgattaccat
ccctcgggaggtaatgagtgccctgggatgctagaaggaaaaaaggctaattcggaggag
ttcatccccatctttgcaaacaattcccgggaactgaaagcttttctggagcacatgact
gaggtgcaggctgactctccacagggtgtctatgacactttactggaacttcggttgcag
aactgggcacatgaacaagatgagcagaccaaggagaagttgcacgatgaagccctcacc
ctcctgaagagcggaaggttcaagacagtctttgataaggccttggtcttatgtcagatg
cacaatttcaaggatggtgttctctatctctatgagcagggcaaacttttccaacagatc
atgcactaccacatgcaaaatgagcagtacaagaaggtgattgaggtgtgcgagttgtat
ggcgaccaagaggcttgtctctgggaacaggctcttagctactttgcacggaaggaggag
aactgcaaggagtatattgctgcagtgctgaaacacattgagaacaagaatcttatgcct
ccactgcttgttgtgcagactctggctcataactccacagccaccctgtctgtgattaag
gattatcttgtcaacaagctgcagaagcaaagccagcagatacagcaggatgagcagaga
attcagaaataccgagaagaaactacgaggatccgcctggaaattgaagagctaaaagaa
agtcccaagatttttcagaagaccaagtgtagcatttgcaccggtgcattggagctccct
tcagtccacttcctctgcggtcattcctttcaccagcactgctttgaaagctactctgag
agtgattcagaatgtcctacttgcatgccagaaaatcgcaaagtgatggacatgatccga
gcccaggagcagaagagagatctgcatgaccagtttcagcatcagctcaagtgttcaaat
gatggcttctcagtcgttgctgactactttggtcgcggtgtcttcaataagctcaccctg
atcacggacttgccctcgggaaagaccgctacaaccatcgaggctggtctgcagcgggag
ctgctcatccacagcaaacgcagtacctga
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