Lonchura striata (white-rumped munia): 110470900
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Entry
110470900 CDS
T05897
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
110470900 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lsr01009
]
110470900 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lsr04515
]
110470900 (PCDH20)
Protein phosphatases and associated proteins [BR:
lsr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110470900 (PCDH20)
Cell adhesion molecules [BR:
lsr04515
]
Cadherins
Protocadherins
110470900 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
Motif
Other DBs
NCBI-GeneID:
110470900
NCBI-ProteinID:
XP_031362083
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All DBs
Position
1:complement(62264698..62268892)
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AA seq
934 aa
AA seq
DB search
LHVADAPLAARSGSGGGSGRGEAPALPHTPVLLSSQHLLLFLLFVGPFNCFASYSRATEL
FYSLNEGLPAGVLIGSLARDLRLPTAGGQHAASLQPPLSFTLASHGLGGQYVQLDNRSGE
LHTSAVEIDREALCVESSGATIFGESTAVSSSSSSPESCLLLLDVLVLPQEYFRLVKVKI
AIRDVNDNAPRFPVPNIRLSVPENAPVNTRLAIEHPALDPDMGTNGVQTYRLRDNYGVFT
LDVEENENGERTPYLIVMGALDRETQDEYVTVIVAEDGGTPPLMGSATLTIGISDINDNC
PQFNDSQLNVTLYGNSSLGTHVATVHAVDMDLGSNAQITYSYSQKVPQPSRDLFHLNEST
GAIILSTKVDGDTPRLHRLIILGNGPGCIPAVITVLVTIIKVMMRPPEVVPRFIANEVEG
VVYLKELEPINTPIAFFTIKDPDEKYKVSCYLDGDGPFRLSPYKPYNNEYLLETTKPLDF
ETQQLYEISVVAWNSEGFHVKKVVKVQVLDDNDNSPVFSEQLIELSIEENNVPNAFLTKL
HATDADSGERGQVSYFLGPDAPSYFALDKTTGVLTVSTQLDREEKEKYRYTVKAVDSGFP
PRESIATVTITVLDKNDNSPRFINKDFSFFVPENFPGFGEIGVISVTDADAGQNGWVALS
VLNGSDIFVIDTGKGVLRAKVSLDREQQSSYVLWIEAVDGGDPALSSTAKITILLLDIND
NPPLVLFPQSNMSYLLVLPSTLPGSPITEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRI
DPKTGNITLEESLMQNDYGLYRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLL
RKEPDISVEEKQPQISIEPTHKKMESASCMPTLVALSIISLGSIALVTGMGIYICLRKEK
KHHRADENLEVQIPLNGRINLHMLEKKPVEISNI
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
cttcatgttgcagatgcaccactcgctgctcgaagtggcagtgggggaggcagtgggcgg
ggggaagctccagcccttcctcacacccctgtgcttctctcttctcagcacttgctcctc
ttcctgctcttcgttgggcctttcaactgctttgccagttacagccgcgccactgagctc
ttctacagcctcaacgaggggctgcctgctggggtgcttatcggcagcctggcccgtgac
ctgcggctcccaacggctggtggccagcatgctgcatctctgcagcccccactttccttc
accctggcctcccatggcttgggggggcagtatgtgcagctggacaaccgctctggagag
ctgcacacctcagcggtggagatcgacagggaagctctatgcgtggaaagcagcggggcc
accatcttcggggaatcgactgccgtctcttcttcctcctcctcaccagagtcgtgcctg
ctgctgctggatgtgctggtactgccacaggagtactttcgcctggtgaaggtaaaaatt
gctatccgtgatgtcaacgacaatgcgccccgcttccctgtgcccaacatccgcctctcg
gtgcctgagaatgcccctgtgaacacccgcctggctattgagcaccctgcccttgaccct
gacatgggcaccaatggtgtccagacctaccgcctgcgagataactatggtgtcttcacc
ctggatgtggaggagaatgagaacggggagcggactccctacctgattgttatgggggca
ctggacagggagacacaggacgaatatgtgacagtcatcgtcgctgaggatggggggact
ccgccactcatgggcagtgccaccctcactattggcatcagtgacatcaatgacaactgc
ccccagttcaatgactcgcagctcaatgtcactctttatgggaattccagcctggggaca
cacgtggctactgtccatgcggtggacatggaccttggatccaatgcccagattacctat
tcctatagccagaaggtcccccagccatccagggacttgttccatctgaatgaaagcaca
ggagccatcatactctccactaaagttgatggggacactccaaggctacacaggctgatc
atactgggcaatggtcctggctgtattcctgctgtgattacagtgctggtgaccatcatc
aaagtcatgatgaggccacctgaagttgttcctcgtttcatagctaatgaagtggaaggg
gtggtctacttaaaggaacttgagcctatcaacacacctatagcattttttaccatcaaa
gaccctgatgaaaaatacaaagtcagttgctatttggatggtgatgggcctttcagactt
tcaccgtacaagccatacaacaatgaatacctgttggagaccacgaagcctttggacttt
gagacacagcagctgtatgaaatctccgtagttgcatggaactcggaaggatttcatgtc
aagaaagttgtcaaagtacaggttctggatgacaatgacaattccccagttttctctgaa
caactgatagaattgtccattgaggagaacaatgttcccaatgcttttttgaccaaactg
catgctactgatgctgacagcggagaaagagggcaagtatcctatttcttaggtcctgat
gccccttcctattttgctttagataaaaccacaggagttcttacagtttccacccagctg
gacagagaagaaaaagagaaatacagatacactgtcaaagcagtagattctggattccct
ccaagagaatcaatagcaactgtcaccatcactgtattggataaaaatgataacagtcca
agatttattaataaggatttcagtttttttgtgccagaaaactttccaggttttggtgaa
attggagttataagtgtgacagatgctgatgcagggcaaaatggatgggttgccctttca
gttctgaatggaagtgatatttttgttatagatactggaaaaggagttttgagagctaaa
gtctccctggacagggagcagcaaagctcctacgttctgtggattgaagcagttgatggt
ggtgatcctgccctgtcttctacagcaaaaataactatccttcttctggacataaatgac
aaccctcctttggtcttgtttcctcagtctaatatgtcttacttgttagtccttccttct
acccttcctggctctcccatcactgaggtctatgctgtcgataaggacactggcatgaat
gcagtcatagcttacagtatcataggaagaagaggccctcggcccgaatcatttaggatt
gaccccaaaactggtaatatcaccttggaagagtcactgatgcaaaatgactacggcctc
tatcggctgcttgtaaaagttagtgatcacggctacccggaacctctccactccactgtc
atggtgaacctttttgtcaatgataccgtcagcaatgagagctacatcgaaagtttgtta
aggaaggagcctgatatcagtgtagaagaaaagcagccacaaatatccatcgagcctaca
cataaaaaaatggagtcagcatcctgcatgcctaccttggtagctctttcaataataagc
ttgggttcaattgctttagtaacagggatgggaatttacatttgtctaagaaaagagaaa
aagcatcacagagcagatgaaaacttggaagtacaaatcccattaaatggaagaattaac
ctgcacatgttggagaagaaaccagtggagatttctaacatatga
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