Lonchura striata (white-rumped munia): 110470926
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Entry
110470926 CDS
T05897
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03013
Nucleocytoplasmic transport
lsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110470926 (UPF2)
03015 mRNA surveillance pathway
110470926 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110470926 (UPF2)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110470926 (UPF2)
mRNA cycle factors
P-body specific factors
110470926 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
110470926
NCBI-ProteinID:
XP_021386653
UniProt:
A0A218VAV0
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Position
1A:complement(6478215..6530351)
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AA seq
1271 aa
AA seq
DB search
MPAERKKPANMEEKESQLNNKEKEFSERRPVSTREKPKEDVKVGMKRETLKVPEDKKKKM
EEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEEAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPESRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKYSQNKDLSKDESKDSKDAKDNKEAAGNEDLELELENLDINDDALELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAVRQVQDLEREFLIKLGIVNDKDSKD
SITEGENLEEDEEEEEGGAETEEQSGNESEVNDPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagccagcaaatatggaagaaaaagaatctcagttaaataat
aaagaaaaagaatttagtgaaaggcgaccagtgagcaccagggagaagccaaaagaagat
gtgaaggttggcatgaagagagagactttaaaggttcctgaagataaaaagaaaaaaatg
gaagaggataaaagaaagaaggaagacaaagagcggaagaaaaaagaagaggataaagta
aaggcagaagaagagcaaaagaagaaagaagaagaagaaaaaaagaaacttgaagaagag
gagaaaaagaaacaagaggaggaagaaaaaaagaaacaagaagaagaagctgctcaactg
aaggagaaggaggaagcacatcagctccatcaggaggcttgggagcgccatcaggcaaga
aaagagctccgcagcaaaaaccagaacgcaccggagagtcgtccagaggaaaacttcttc
agcagactggactccagcctgaagaagaacacggcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccatgactttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaggccaaactgaaaatatcagatgtgaactgc
gctgtgcacttgtgttccctctttcaccagcgatatgctgattttgctccttcgttactt
caggcctggaaaaaacattttgaagcaaggaaagaagagaagactcccaacattaccaag
ttaagaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtttgtctttaatctatgagcagcttaaaaatattattaacgctgatcgagaatcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggt
ttggtgccaaggaaggtaaaaactgtggcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacaacagcccttccagaatttgttgaaggaatactttaca
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
agacgcattctccactccaaaggagagttgagtgaagatcgacacaagcagtatgaggag
tttgcaatgtcctatcagaagctgttggcaaattctcagtctctggctgatcttttggat
gagaacatgcctgacctcccccaggaaaagccaacacctgaggaacatggacctggtatt
gatattttcacaccaggaaagcctggagaatatgacctggaggggggtatctgggaagat
gaagatgctagaaacttctatgagaatctcattgacttgaaggcttttgtgccagcaatt
ttgtttaaagataatgaaaaatattcccagaacaaggatttgagcaaagatgaatcaaaa
gattcaaaagatgccaaagataataaggaagcagctgggaatgaggatctggaattggag
ctggagaacctggatattaatgatgatgcactggagttagactgtggagatgaggcagaa
gatcttacaaagaaacttcttgatgagcaagaacaagaggatgaagaagccagtactgga
tctcatttaaaactcatagtagatgcttttcttcagcagcttccaaattgtgtcaacaga
gacctcatagacaaggcagcaatggatttttgcatgaatatgaatacgaaagccaacaga
agaaaactagtacgagcacttttcatagttcctagacaaagattggatttactaccattt
tatgcaaggctggttgccacattacatccctgtatgtctgatgtagcagaggatctctgt
tccatgctgaaaggggatttcaggttccatgtaagaaaaaaggaccagatcaacattgaa
acaaagaataaaactgtgagatttattggtgagcttaccaagtttaagatgttctccaaa
aacgatactcttcactgtttaaagatgcttctgtcagacttctctcatcaccatattgaa
atggcgtgtaccttgctggaaacctgtggaagattcctcttcagatcaccagagtctcac
ctaagaaccagtgttcttttggaacaaatgatgaggaaaaaacaagcaatgcatcttgat
gcacgctatgttacaatggtagaaaatgcctattactactgtaatcctcctccagctgaa
aaaactgtgaagaaaaaacgtcctcctttgcaggaatatatccgtaagcttctttacaag
gatctctccaaggtcaccacagagaaggtcctgagacagatgcgcaagctgccttggcag
gatgcagaagttaaggactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaggatgtg
ggaattcatgttgtggatggagtactagaggatattcgactaggaatggaggttaatcaa
ccaaagttcaaccaacggcggatcagcagtgccaagtttttgggggaactttacaattat
cgaatggtggagtcagctgtaatatttagaactctgtattccttcacctcttttggtgtg
aaccctgatggcagtcctagtccactggaccctccagaacatcttttcagaatcagactt
gtctgtactatccttgatacctgtgggcagtattttgacagaggatccagcaagcgaaaa
cttgattgcttccttgtatattttcagcgctatgtgtggtggaaaaaaagtctggatgtt
tggacaaaagaccacccttttcctatagacatagactatatgatcagtgatacactggaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctgtcagacaggtgcaa
gacttggaacgagaattcctaataaaattgggaattgtgaatgacaaagattccaaggat
tccattacagaaggagagaatttggaagaggatgaagaagaggaggaaggtggagcagag
acagaggaacaatctggaaatgaaagtgaagtaaatgatccagaagaagaggagggctct
gacaacgaggaagaagagggtgaagaagaggaggaagagaacactgattatcttacagac
tccaataaggaaaatgaaaccgacgaggagaatacagaagtaatgattaaaggaggagga
ctgaagcatgtcccttgtgcagaggatgaggacttcattcaggccttggataagatgatg
ctggaaaatcttcagcaacggagtggtgaatctgttaaagtgcatcagttggatgttgct
attcctctgcatctcaaaagtcagctgaagaagggccccccacttggaggtggggaagga
gagtcagagtctggggacacaatgccatttgtcatgttaacaagaaaaggcaacaaacag
cagtttaagatcctaaatgtaccgatgtcttcccaacttgctgcaaaccattggaaccag
cagcaagcagaacaggaggagaggatgaggatgaaaaagctcactttggatatcaatgaa
cggcaggaacaagaggactatcaggaaatgttgcagtctctggcacagcgtccagctcca
gcaaatactaatcgtgagcggcggcctcgttaccagcatccgaagggagcacctaatgca
gatctaatctttaaaaccggtgggaggagacgttga
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