Lonchura striata (white-rumped munia): 110471044
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Entry
110471044 CDS
T05897
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110471044 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsr03032
]
110471044 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110471044 (TOPBP1)
DNA replication proteins [BR:
lsr03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
110471044 (TOPBP1)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
110471044 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
110471044
NCBI-ProteinID:
XP_021386928
UniProt:
A0A218UNR6
LinkDB
All DBs
Position
2:complement(44276969..44300187)
Genome browser
AA seq
1520 aa
AA seq
DB search
MRSSKDPFFVKFIKSAGSSEYFSKALEAIKEFQSEEHLQILEEETVLNIKENDKSLYICD
PFSGMGFSHLKKLGCRIVGPQVVLYCMQSQRCVPRAEYPVYNMTMADVTVSCTSMEKDVR
EEVHKYVQMMGGCVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKTLWDKSQQ
GMVRYTDVNMEDYVCPVFLGCTICVTGLSSSDRKEVQRLTTEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSMQWFSDSIKKGFCQDETMYKIEAGSKLSNAPSTSTPTND
TSKPPNHAFSDVSHISNINLSGVNETACSSSMSSRLEPVSDELENLDISSFQAAEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVIVGESNDELKHFLDKTAHRPHI
VTAKWLLESFGKGCLCPVEHYIPLNYQFLENPILEQPGMKSIFPKKTSLLKKDAVNIIKH
QQTAEDDFLSQYVNNYSTLDDIEKITSKTFSDVTNSTAQGENQPSVCNGSLAESSALAEG
GLFFRKRFLLLGFGEEDESCIADIIKENAGEVLPLQSRTIADYAVVPILGCTVKATVGDV
VTNTWLITCVEQQALLDIRSNPLFTPVVVMEGATPLEDCVLSFSQFTGAERDSLVYLAEL
LGARVQEFFVRKASVKKGMFASTHLVVRDPNGSKYEAAKKWNLPAVTVAWLLQSARTGKR
ADESKFLVENAEAEDMESFVTQLSKTPATVKCPDLEHPIHLLEAGKKGPVTPLDINRFQS
KAFQAVISHHTGKTTPLAQGGPLLKEPSLNLDTPSKFLSEDKFFKPSFDVKDALEALQTP
RGPEQRTRKLSTPLSEVIGRNLKLALASSTTHAAALTASPQLAAAQPEVEEDPKPLADAV
IYVSKKLSKRQRELNAVAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIHIV
SEHWLLESARECKRLPESLFPHTYNPKMSLDISAAQDIRLSSSFSKPLSTGKPAEENEII
PVDEDDAEDDATTDQIKETVTVGEEQIVASESKGVLTQALEMRENFQRQLQELMSATSLV
KPQGQRGSLSRSSFDGSPATPDSARSVRNGRSRVLEALRQSRQTLADINTEQSQSEQIIW
DDPTAREERARLVSNLQWPNSPSQCLEQGQSNTNKNVDESALKGSVPDAKMAGIAVAEAD
HGDVTDNLKNPIYRDPKTPLKDNLIPTPQAPSIAFPLANPPVAPEPKEKVVTEDEKADEE
IEKLPKFQLSSLNPQERFDYCHLIEKLGGIVLEKQYFDPSCTHIVVGHPLRNEKFLASMA
AGKWVLHRSYLEACRGAGCFVQEEDYEWGSNSILNVLSGINVNQKKLALAAMRWRKKIHK
GKQETGVVEGAFSGWKVIVNVDQTKEAGFRRLLQSGGAKVFSGHSASLFKEATHLFADFS
KLKPDDSRVNVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPEAESYLQNNSDLGIG
SSQKRKALGEMSRVKRSRIH
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtagtaaggacccgttttttgtgaagttcataaagtctgccgggagctcggag
tatttttctaaagctcttgaggctataaaagaattccagtcagaagaacatctccagatc
cttgaagaagaaacagtactcaatataaaagaaaatgataagtcactttacatttgtgat
cctttcagtggcatgggtttcagtcatctcaaaaagcttggctgtaggattgttggacca
caggtagttctgtactgcatgcagtcgcagcgctgtgtcccaagagctgagtatcccgtg
tacaacatgaccatggctgatgtcacagtgtcctgtaccagcatggagaaggacgtgagg
gaagaagttcataaatatgtgcaaatgatgggtggatgtgtatacagagatctcaacgtg
tcagtaactcatcttatagctggagaagttggcagcaagaaatacttggtagctgcttcc
ctgaagaaacctattttgcttccctcttgggttaagacattgtgggataaatctcagcaa
ggcatggtgaggtacactgatgttaacatggaagactacgtctgtcctgtgttccttggc
tgcacaatttgtgtcactggcttaagcagctccgacaggaaagaagtgcagcgcctcact
actgagcatggtgggcagtacacgggccagctgaagatgaatgaatgcactcacctcata
gttcaagagccaaaaggtcagaagtatgaatgtgccaaaaagtggaatgtgcactgtgtg
tctatgcagtggttttctgacagcatcaagaagggcttctgtcaggatgagacaatgtat
aaaatagaggctggatcaaaactgagtaatgcacccagcacatcaacacctacaaatgac
accagcaagcctcccaatcatgccttttcggatgtcagccacatttccaatatcaatttg
agtggtgttaatgaaactgcatgtagttcatctatgagcagcagactggaacctgtttct
gatgagctggaaaacttggacataagttcttttcaagccgctgaagatttgttagatggg
tgtcgaatctatctctgtggcttcagtggcagaaagctggacaagatgagaaggcttatt
aattgcggtggtggcgttcgatttaatcaacttaatgaagatgttactcatgtcattgtg
ggggaaagtaatgatgagctgaaacactttttggacaagacagctcacaggcctcatata
gtgacagcaaagtggttgctggaatcatttggtaaaggttgtctatgtccagtggaacac
tatatccctctaaactaccagtttctggagaatccaattttagaacaacctggaatgaag
tcaatttttcccaaaaaaactagtctcttgaagaaagatgctgtgaacattataaagcac
cagcaaactgctgaagatgacttcctttctcaatatgtaaataactattctacactagat
gacattgaaaaaataacatccaaaaccttcagtgatgttactaactcgactgcccaagga
gagaatcagccttctgtctgtaatgggtctttggcagagtcttctgcattggctgaagga
ggcttatttttcaggaagagatttcttcttctgggttttggtgaggaggatgagtcctgc
attgcagatattataaaggagaatgctggggaagttctgccactgcaaagcagaaccatt
gcagactatgctgtggtgcctatattagggtgcaccgtgaaggcaactgttggtgacgtc
gtcacaaatacatggctgataacatgtgtggaacagcaggctcttttagacatccgatcc
aatccacttttcacaccagtcgtggtaatggaaggagctacccctctggaagattgtgta
ctttcttttagccagttcacaggtgcagagagagactctcttgtttatctggcagaactg
ctgggagccagagtccaagaattctttgtgcggaaagccagtgtgaaaaaaggaatgttt
gccagcacccatcttgtggtgagagacccgaacggctccaagtatgaagctgcgaagaag
tggaatttgccagcagtcactgtagcttggcttttgcagtctgcaaggacaggaaagcgg
gcagatgaaagcaagttcttggttgagaatgcagaggctgaagatatggagagtttcgtt
actcagcttagcaagacaccagcaactgttaaatgtcctgatttggaacaccctattcat
cttcttgaagctggaaaaaaagggcctgtgaccccccttgatatcaacaggtttcagagt
aaagctttccaagctgtaatctctcatcatactgggaagacaactcctcttgcacaaggg
gggccacttctaaaagaaccatctttaaatcttgacacaccatcgaagtttctttctgaa
gacaagttcttcaagccttcttttgatgtaaaggatgctctggaagctctgcaaactcct
agaggtcctgaacaaagaaccaggaaactgagcacacctctctctgaagtcattggcaga
aacttgaaactggcactggcaagcagcacaactcatgcagcagctcttactgccagccct
cagttggctgctgcacagccagaagtggaagaagaccccaagcctctagctgatgctgtt
atatacgttagtaaaaaacttagtaagaggcaaagggagctgaatgcagtagcagcctct
cttggtgcagactacagatggtgctttgatgaaacagtaacacacttcatctataaggga
ggacagaacgataacaataaggagtataaatctgttaaagaacggggtatacatattgtt
tcagaacattggcttttagagagtgcccgagaatgtaaacggcttcctgaatctctcttt
cctcacacttacaatcccaaaatgagcctggacatcagtgcagctcaagacatcaggctc
tcctcctccttcagtaaacctctttcaactggaaaaccagcagaggaaaatgagattatt
ccagtggatgaagatgatgctgaagatgatgcaaccactgaccaaataaaggaaacagtc
actgtaggggaagaacaaattgtggcaagtgaatccaaaggagttttaacgcaagcacta
gaaatgagggagaacttccaaaggcagctgcaggagctcatgtctgccacatcactagtg
aaaccacaagggcaaagaggatccctttcaaggagcagctttgatggctctccagccact
cctgatagcgcacggtctgtgcgaaatggccgcagtagggtcttggaagctctaaggcag
tcccgccagacactggcagatataaatacagagcaatcccagagtgagcagatcatttgg
gatgatcctactgcgagggaagagagagcaagacttgtcagcaaccttcagtggcctaat
agtccttctcagtgccttgagcaaggtcagagtaacaccaataagaacgtggatgagtct
gccctcaaaggatctgtacctgatgcaaagatggctggtatagctgttgctgaggctgat
catggagatgtgactgacaatctgaagaatcccatatatagagatcccaaaacaccctta
aaggacaacttgatacctactccacaggcccccagcattgcattccccctggctaaccct
cctgtggcaccagagcccaaagaaaaggttgttactgaagatgagaaagctgatgaagaa
atagaaaaacttcctaaatttcagctgtcttctcttaaccctcaagaaagatttgattac
tgccatctgattgagaaattaggtggaatagtacttgagaaacagtactttgatccgagt
tgcacacacattgttgtgggacatcctcttcggaatgagaaattcctggcttcgatggca
gctggaaagtgggtgcttcatcgttcctacctggaggcgtgtagaggagctggctgcttt
gttcaggaagaagactatgagtggggcagtaactccatacttaatgttctgtctggaatc
aatgtaaaccagaagaaactagcactggcagccatgaggtggaggaaaaaaattcataaa
gggaagcaagaaaccggtgttgttgagggagctttcagtggttggaaagtgattgtgaat
gttgatcaaaccaaggaagcaggtttcaggcgccttcttcagtcaggaggagcaaaagtg
ttctctggccattctgcatctctgtttaaagaagcaactcacctctttgccgacttcagt
aagctgaagccagatgactccagggtgaatgtggcagaggcagcagcccagggagtgaac
tgcctcaaacccgagtacattgctgactacctcatccaggatccacctccccctatggag
tcttactgcctgccagaagctgagtcttaccttcagaataactcagatcttggaattgga
tcatcccagaaaagaaaagcgctgggagaaatgagcagagtcaagcgatccagaatacac
taa
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