Lonchura striata (white-rumped munia): 110471116
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Entry
110471116 CDS
T05897
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110471116 (PMS1)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
110471116 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
HMG_box_5
CHDNT
Motif
Other DBs
NCBI-GeneID:
110471116
NCBI-ProteinID:
XP_021387068
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All DBs
Position
7:7564254..7608757
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AA seq
953 aa
AA seq
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MGKPALPGFFAFQSSLNLSTMKQLPGETIRLLSSSQVITSVVSVVKELIENSLDASATGI
DIKLENYGFSKIEVRDNGSGIKVDDVPVMAIKHYTSKISSSEDLERLTTYGFRGEALGSI
CSISEVLVTTKTAADDFSIQYALDSNGHVTSQKPSHLGQGTTVTVLNLFKNLPVRKQFYS
TNRKCKEELKKVQDLLTAYGIIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMS
SMVPFQHCCEYPEINLSGFLPKAESDASLTSLSSSERSFIFINNRPVLQKEILKLIRQYY
SQVTQKECTRLYPVFFLSITVPASAVDVNITPDKTQVLLHYKESVLLAVENVLKSLYGPL
PAAVPGESNKTDVTSEDMFVHRTDQTDVAVNEMGPSGNDELHAHTSFLSLSSDVQNCQAG
KNTEICLNHQTFSGDNVYSCLDKREVSKSDTFSDSSSNLLCEEEKNGQNMADIQSNSVPV
DPESKKASEHLLSSDNTDKIDKNEEILVPKDLPEISADSWSMGSAFKDILGDKLEPVKIL
IPEVGGTTNKQNEYTGEKSSDPQSSNQSIKKKNVISEKFGHVTAYDLINSKIIKKPKSAF
EFFTHECRPKLIDDNPKTSMNDILLTIEEQWKNLNEEEKQNYEIKATKDQERYNREVKKA
NAQPMHQPAKEAEKHKRKLKSSASDQQKLDKIFHNQIEKKGKLEQPVKIVTVPFALSSCR
RHLQRPERNVSDEHELFLIRRQSFPDVWILATEKNVKLLNPYRLEEALLCKRLLVNHKLP
VEKLDTPIVLTDSLIGGAQYMAALYKMQKNYQSFHGSGYLSDPRLVANGFQIKVIEGVSA
TESHLEIEGMANCLPYYGISDLKEILNAVVNRNAKEVCECRPLKVINYLEGEAVRLARQL
PLHLSKEDVQNTIYRMKQQLGKENKGCVHGRPFFHHLTDIPEVDKHNSMEIIQ
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagccagcactgccaggattctttgcctttcagtcttccctgaatctttccacc
atgaaacagctgcctggagagacaattcggctcctttcaagttctcaggtgattacttca
gttgtcagtgtggtaaaggagctgatagaaaattccttggatgccagtgctacaggcatt
gatattaaactggagaattatgggtttagcaaaatagaagtaagagacaatggcagtgga
attaaggttgatgatgttccagttatggcaattaaacactacacctcaaaaatcagctct
tctgaggaccttgaaaggctgacaacatatggtttccgcggggaagctttgggctcgatt
tgcagcatatcagaagttttggtcacaacaaagacagctgctgatgatttcagcattcag
tatgctttggatagcaatggacatgtaacctctcaaaagccttcccatcttgggcaaggt
actacagtaacagtcctaaatttgtttaagaatcttcctgtaagaaagcagttttactca
acaaacagaaaatgtaaggaagaactgaaaaaagtccaagatctactgacagcatatggt
atcataaaaccagacctgaggataacattaacacataataaggcagttatttggcagaag
accagggtatcagatcacaaaatggcctgtatgtcagttctgggaacagccgttatgagc
agtatggtaccttttcaacactgctgcgaatatcctgagataaatctttctggttttctc
ccaaaagctgagtcagacgcttctttgacaagcctttcaagttcagaaaggagtttcata
tttataaacaatcgtccagttcttcagaaggaaatactgaagttaattcgacagtactac
agtcaggtgacacaaaaggaatgtactcgcttatatcctgttttctttttgagtattact
gtacctgcctctgctgtggatgtgaatataacacctgataaaacacaagttttgctgcat
tataaggaatctgtcttacttgcagttgaaaatgtgttgaaatcactgtatgggccatta
cctgctgcagtccctggtgaaagtaataaaacagatgttacctcagaagacatgtttgtt
catagaacagaccaaacagatgtggctgttaatgaaatgggaccatctggaaatgatgag
ctacatgctcatacttcattcctttcactcagcagtgatgtgcaaaactgtcaagcagga
aaaaacacagagatctgcttaaatcatcagacatttagtggtgataatgtatacagttgc
ttggacaaaagagaggtttctaagagtgataccttttcagacagttcctcaaatttattg
tgtgaggaagaaaagaatggacagaatatggctgatattcaaagtaatagtgttcctgtg
gaccctgaatctaaaaaagccagtgagcaccttttgagttctgataatactgacaaaata
gataaaaatgaggaaatcttagtccctaaggatttacctgaaatctctgctgatagttgg
agtatgggaagtgcatttaaagacattctgggagacaagctggaacctgttaagatcttg
attcctgaagttggagggacaactaataagcaaaatgaatacactggtgaaaaaagcagt
gatccacaaagctcaaatcaaagcataaagaaaaaaaatgtaataagtgaaaaatttgga
catgtgacagcttatgacttaattaacagcaaaataataaagaaaccaaagtctgcattt
gaatttttcacacatgagtgtcgtccaaaattgatagatgataatccaaagaccagcatg
aatgacatcctgctgacaattgaagagcagtggaagaatttgaatgaagaggaaaaacag
aattacgaaataaaagccactaaggaccaggaacggtacaacagagaggtcaagaaagcc
aatgcacagccaatgcaccaaccagcaaaggaggcagaaaaacacaaacgcaagttaaag
agttctgcatctgaccagcagaagcttgacaagatatttcataaccagattgaaaagaag
gggaaactggaacagcctgtgaaaattgtgacagtgccttttgctctgagttcctgtaga
cgtcaccttcagaggccagagagaaatgtttcagatgaacacgagcttttcctgatccgt
cgtcagagttttcctgatgtctggatacttgctactgaaaaaaatgtcaagttgctgaat
ccatatagattggaagaggccctgctatgtaagagattattggtgaaccataagcttcct
gtagagaaactggacactccaattgtgttaacagacagtcttattggtggagctcagtat
atggctgctctttataaaatgcagaagaattaccagagtttccatggatcaggttatttg
tcagatccaaggcttgtagcaaatggattccagataaaagtgatagaaggtgtttcggct
acagaaagtcatctggaaatagaagggatggcaaattgtctgccatattatggaatttct
gatttgaaagaaattctgaatgcagtagttaacagaaatgcaaaggaagtatgtgaatgt
aggcctctcaaagtgataaattacttggagggagaagcagtacgtttagctcggcagctg
cccttacatttgtcaaaagaagatgtgcaaaacacaatttacaggatgaagcaacagctt
ggaaaggaaaataaaggctgtgttcatggtcgtcctttttttcatcacttaacagatatt
ccagaagttgacaagcacaactccatggaaattattcagtaa
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