Lonchura striata (white-rumped munia): 110471328
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Entry
110471328 CDS
T05897
Name
(RefSeq) protocadherin beta-16
KO
K16494
protocadherin beta
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lsr04515
]
110471328
Cell adhesion molecules [BR:
lsr04515
]
Cadherins
Protocadherins
110471328
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
110471328
NCBI-ProteinID:
XP_021387566
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Position
13:complement(2455403..2460630)
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AA seq
851 aa
AA seq
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MLGATEDGGRLLWRVMTYGRRNGGRKRQVILFILYVCVCQSGAETLRYSLPEEMERDSFV
ANIAKDLGVPLSQLAARKARVVSEGNEQLFRLNQNTGVLTAKESLDREEICPQSDTCTLI
FKIFFENPLQLIRGEVEVRDINDNSPVFPEKEMVLKILETASPGSRFPLESAQDKDVGIN
GLQNYSLGPNPHFSLAIGTAKDGVKYLELVLQRQLDREEQTELKLLLTATDGGSPPRSGT
AQVRIVVLDANDNIPVFERETYEVRLAENSPLEQLVVRVAAADPDEGSNGEVRYAFTQTS
ERSRQLFQLNPTTGEIRVAGNLDFEETKSHKMVVKATDGAELSGHCKVQVEVLDVNDNAP
EIALTSLSASIPEDAPPRTVVALFSVRDRDSGDNGRTECSIDGDLPFSLTPTFDNYYELR
TNAALDRERTAEYNITITATDWGRKRLSSQETIFVQISDVNDNPPEFTQQVYTMSVTENN
SPMIRIGSMKATDADAGINARVNYALVRQEGREQPEVSVNAENGDVYILRPLDYEKVRAF
EVTVRAADGGSPPLSAQAVLHIAVRDENDNAPVLLHPAPDSSAAGELVPRWAPAGYLVAK
VVAVDADAGQNAWLSYELAKATEPALFRVGLHSGEVRTARAVTERDAPRQRLIVLVRDRG
HPSRSATATLAVTLVDGFSEAHLRVSEEAPAAEPDGPLTLYLIASLVCVSALFLATAAAA
VVVKVRRARRSETENLPTFPTTATESSAGSLPRSYVYDVCFAAGTVNSEFRFLRPLFPCF
PAGLPPGPAEQRSSVCSQDAANFGGEGDWTAQGSAPLSEDTRPRAADAVCPANRELDLNA
SSEQNPWLTQQ
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgctgggagccaccgaggacggtggacggcttctttggagagtgatgacgtatgggaga
cggaacggaggcagaaagaggcaagtgatcctgtttattctgtatgtttgcgtgtgtcaa
agcggggctgaaaccctccgctactctctgccggaggaaatggagagggactcttttgtc
gccaatatcgccaaggacctgggggttcctctgagccagcttgcggctcgcaaagcccgc
gttgtgtccgaggggaacgagcagcttttccggctcaatcaaaacaccggagtcctgacg
gcaaaggaatcgctggaccgagaggagatctgccctcagagcgacacctgcacgctcatc
tttaagatattctttgaaaatccattgcaacttatccgaggggaggtggaagttcgtgac
ataaacgacaactcgcccgtgttcccggagaaggagatggttttaaaaattctagaaaca
gcatctcctggctcccgtttccccctggaaagcgcccaggacaaggacgtgggcattaac
ggtttgcagaactacagccttgggcccaatcctcatttctccctcgctattggaacagcg
aaagatggagtaaaatacctggaacttgttctacagcgccagctcgatcgtgaagagcag
acagaactgaaattacttctgaccgccaccgatggggggtcaccacccaggtcaggcaca
gcccaggtccggatcgtagtgttggatgccaatgacaacatcccggtcttcgagagggag
acctacgaggtgcgcctggctgagaacagccccctggagcagctggtggtcagagtcgct
gccgcggatcccgacgaagggtccaacggggaagtgcgttatgcctttacccagacatca
gagcgatcccggcagctcttccagctgaacccaaccaccggtgaaatacgagtcgcgggc
aacctggacttcgaagaaacaaaatcccacaagatggtggtgaaagccacggacggcgca
gagctatctgggcattgcaaagtgcaggtggaggtcctggacgtgaatgacaacgccccg
gagatagcgctcacctccctcagcgcctccattcccgaggacgccccgccacgcaccgtg
gtggctctgttcagtgtgcgggaccgggactccggggacaacggcaggacggaatgttct
atcgacggggacttgccgttcagtctcacccccacttttgataattactacgaactgaga
acaaacgcggctctggacagggagaggacggcggagtataacattaccatcacagccacg
gactggggcaggaagaggctgagctctcaggaaaccatcttcgtgcagatatcggatgtg
aacgacaaccccccagagttcacccagcaggtttacaccatgtctgtcacggagaacaac
agccccatgattcggatcggcagcatgaaggccacggacgccgacgcaggaataaatgcc
cgcgtgaactacgcgctggtgcggcaggagggcagagagcagcccgaagtgtcagtcaac
gctgaaaacggggatgtttatatcctccgcccgctggactacgagaaggtgcgcgccttc
gaggtgacggtgcgcgcagccgacggcggctccccgccgctcagcgcccaggccgtgctg
cacatcgccgtgcgggacgagaacgacaacgcgcccgtgctgctgcacccggcccccgac
agcagcgcggccggagagctggtgccgcgctgggcacccgccggctacctggtagccaag
gtggtggcggtggacgcggacgcggggcagaacgcgtggctgtcctacgagctggccaag
gccacggagccggcgctgttccgcgtggggctgcacagcggcgaggtgcgcacggcgcgg
gccgtgacagagagggacgcgccccggcagaggctcatcgtgctggtgcgggatcgcggg
catccgtcgcgctctgccactgccaccctcgccgtgacactggtcgatggattctccgaa
gcccatttacgggtgagcgaggaggccccggccgccgagcccgacgggccgcttactctt
tacctcatcgcctccctcgtgtgcgtgtcggcgctgttcctcgccaccgcggcggccgcc
gtggtagtgaaggtgcggcgggccaggcggagcgagacggagaatttgcccacattcccc
acgacagccacggagagcagcgcgggctccctgccccgcagctacgtgtacgacgtctgc
ttcgccgccgggaccgtcaacagcgagttccgtttcctcaggccgctcttcccctgcttc
cccgccgggctgccccccggcccggccgagcagcggagctcggtgtgctcgcaggatgcg
gccaacttcgggggcgagggcgactggactgcacagggcagtgctcccctctctgaagat
accaggcccagagctgcagatgcagtttgccctgcaaacagggagctggatctaaatgcc
agttctgagcaaaacccttggctcacccagcaataa
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