Lonchura striata domestica (Bengalese finch): 110471434
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Entry
110471434 CDS
T05897
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110471434 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsr03000
]
110471434 (ARID1B)
03021 Transcription machinery [BR:
lsr03021
]
110471434 (ARID1B)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110471434 (ARID1B)
Transcription factors [BR:
lsr03000
]
Eukaryotic type
Helix-turn-helix
ARID
110471434 (ARID1B)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110471434 (ARID1B)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110471434 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
ABC_ATPase
Motif
Other DBs
NCBI-GeneID:
110471434
NCBI-ProteinID:
XP_021387761
LinkDB
All DBs
Position
3:complement(53083934..53409630)
Genome browser
AA seq
2373 aa
AA seq
DB search
MIMAAQVAAAPASANNSKGKAPSLPSGLGPERGPGGTGAPGPGPALGVGEGSPAGSNSVN
NLDHHLHHHHRSEPPNMANNAAPAAAAGNNNNASGGGGGSSSEPALKEGGSSSELSSSSS
SSSSSSSSNPGSAMETGLLPNHKLKSVGGDHPAAPPHHHHAHHPHHHAHHHHAHHPHHHH
HALQQQLNQFPPPPPQQPPPQHHPVQNNNSSLGGGGGGGSGSNNNGGGGGGAAQPSADME
QQQHGGKDSVLGAQAEPTQQPQQMLNKGADEEEMPGKMGEPIGGRYDHPGLGPLGGQQQP
QQPPPSAGSGGGGLGGGGGSGGGGGGPSAVGVSEFNSYYGNPAPAPASSATASRAGPCFD
QHGGQQSPGMGIMHPTAAPNSMDPLQNSHEGYPNSQYNHYPGYGRGPGGGGAGGGGGAGA
VAAAAAAAGAGGGGYGGSAAGYGVLSSPRQPGGGMMMGPGGGAGLGKAGAGAAAAAGGFA
RFSGQNQHPSGATPTLNQLLTSPSPMMRSYGSSYPDYSSPSAPPQPQPQAAAAAPGSQQA
AAGMGMGKDMGAQYGAANPAWAAAQQRNHPAMSPGNTGQAISRTQGSPMDPMVMKRPQLY
GMGNNPHSQAQQSSPYPGQSYGPPGPQRYPVGMQGRAPAAMGGMQYPQQQIPPQYGQQGV
SGYCQQGQQPYYNQQPQPQHLPPQAQYLSQAQQRYQAQQDMSQEGYGTRSQPPMAPGKPN
HEDLNLIQQERPSSLPVEVLASEDATFGHKDLSGSIDDLPTGTEATLSSAVSASGSTSSQ
GEQSNPAQSPFSPHASPHLSGIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPP
GSQSESSSHPALSQSPMPQDRGFMAGIQRNPQMSQYGPQQTGPSMSPHPSPGGQVHPGIG
SFQQSNSSGTYGPQMSQYGPQGNYSRPPTYSGVPNTSYSGPGPGMGINANSQMHGQGPSQ
PCGSMPLGRMPSAGMQSRPFPGNMSSMTPNSPGMSQQGGPGMGPPMPTVNRKAQEAAAAV
MQAAANSAQSRQGNFPAMNQSGIMGSSSPYTQPMNNSSGLMNPQAPPYSMAPNMVNSSAG
NAPMGLADMMTPGESKLPLPLKADGKEEGAPQPESKSKDSYSSQGISQPPTPGNLPVPSP
MSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELGNEPERKLWVD
RYLTFMEERGTPVASLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATTLNVGTS
SSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKIQPPSPANSGSLQGPQT
PQSTGSNSMTEVPGDLKPPTPASTPHGQMTPMQGGRNSAVSVHDPFSDVSDSAFPKRNSM
TPNAPYQQGINMPDMMGRMPYEPNKDPFGGMRKVPGSNEPFMTPGQMPNSGIQDMYNQSP
SGAMSNMSMSQRQQFSYGSGYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGMYPQQQNYKR
HMDGMYGPPAKRHEGDMYNMQYGNQQQEMYNQYGNAYTGPDRRPMQGQYPYPYNRERMQG
PGQMQQHGIPPQMIGGPMQSSSSSEGPQQNMWPTRNDMPYPYQNRQGPGGPAQAPPYPGM
NRTDDMMVPDQRINHESQWPSHVNQRQPSYMSSSASMQPITRPPQSSYQTPPSMPNHISR
APSPASFQRSLENRMSPSKSPFLPSMKMQKVIPTVPVSQVTGPPPQPPPIRREITFPPGS
VEASQPVLKPRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFN
LSQLSGFLELLVEYFRKCLIDIFGILMEYEVGDPGHKALDHKAAKKDDSQSLAEDTGKDE
NDECIDYFDEDEEEGEDEKVEGEEKSIVFSTPGAIADPSERPKQASKFDKLPIKIVKKNN
LFVVDRSDKLGRVQEFDSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRKAPPPLNSPSKK
KDLEGKGESEEQQEKSITATIDDVLSARPGALPEDSNSGSQTESSKFPFGIHQAKSHRNI
KLLEDEPRSRDETPLCTITHWQDSLAKRCICVSNIVRSLSFVPGNDTEMSKHPGLVLILG
KLILLHHEHPERKRAPQTYEKEEEEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLD
LSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNV
DLILATPPFSRQEKLYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKGSI
GNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFL
LHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
7122 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggccgcgcaagtcgcagcggctccggcgagtgcgaacaacagcaagggcaaa
gccccgagcctgccgagcggcctgggcccagagcgaggcccgggggggaccggggctccc
gggccgggccccgcactgggggtcggcgaggggagtccggccggcagcaacagcgtgaat
aatttagatcaccatctccaccaccaccaccgcagcgagccgccgaacatggccaataac
gcggctcccgccgctgccgccggtaacaacaacaacgccagcggcggcggtggcggctcc
tcctcggagccggctctgaaggaaggtggaagctcctcggagttatcttcttcgtcttct
tcctcctcctcctcctcctcctccaacccgggctcggctatggagacggggctgctcccc
aaccacaagctgaagagcgtcggaggcgatcaccccgccgcgccgccccaccaccaccat
gcccaccacccgcatcaccatgcccaccaccaccatgcccaccacccgcaccaccaccac
catgcactacagcagcagctaaatcaattcccgccgccgccgccgcagcagccgccgcct
cagcaccatcccgtgcagaataacaacagcagcctcggcggcggcggcggcggcggcagc
ggcagcaacaacaacggcggtggcggtggcggcgctgctcagcccagtgcagacatggag
cagcagcaacatggaggaaaagacagtgttttgggcgctcaggccgagcccacccagcag
ccgcagcaaatgctgaataaaggcgccgacgaggaggagatgcccggcaagatgggcgag
cccatcggcggccgctacgaccaccccggcttgggacccctgggcggacagcagcagccc
cagcagccgcccccgagcgctgggagcggcggcggcggcctcggcggcggcggcgggagc
gggggaggcggcggcggcccctccgcggtgggtgtctcggagttcaatagctattatggc
aaccctgcccctgcccctgccagcagcgctacggcgagccgcgccgggccttgctttgat
caacatggcggacaacaaagccctgggatggggataatgcaccccacggcggcccccaac
agcatggaccccctgcagaactcccacgaagggtaccccaacagccagtacaaccactac
ccgggctacggccgcggccccggcggcggcggcgcgggcggcggcggcggcgcgggagcc
gtggcggcggcggcggcggccgctggggcaggcggcggcggctacgggggctccgcggcg
ggatacggggtgctgagctccccgaggcagcccggcggcggcatgatgatgggccccggc
ggcggagccggcctcggcaaggctggtgccggcgcggcggcggcggccggcggctttgcg
cggttctccgggcagaaccagcacccgtccggggccacccctaccctgaaccagctgctc
acgtcccccagccccatgatgcggagctacggcagcagctaccccgactacagcagcccc
agcgccccgccgcaaccccagccccaggcagcggcggccgccccgggaagccagcaggca
gcggcgggcatgggcatgggcaaggacatgggcgcccagtacggagcggcgaacccggcc
tgggcagcggctcaacaaaggaaccacccggcgatgagccccgggaacaccgggcaggcc
atcagcaggacccagggcagtccgatggatccgatggtgatgaagaggccgcagctgtac
ggcatgggcaataaccctcactctcaggcacagcagagcagcccctaccccgggcagtcc
tacggccctcccggcccccagcgctatcccgtgggaatgcagggccgagccccggcagcc
atgggaggaatgcagtatccacagcaacagatcccacctcagtatggtcagcaaggtgta
agtggctactgccagcagggccagcagccgtactacaaccagcagccgcagccccagcac
ctgccgccccaggcacagtacctgtcgcaggcccagcagaggtaccaggctcagcaggac
atgtctcaggaaggctatggaaccagatctcaaccccctatggccccaggaaagcctaac
catgaagacttgaatctaatccagcaagaaagaccatcgagtttaccagttgaagtcttg
gcctccgaggatgctacatttggacacaaggatttatctggatccattgacgacttgccg
actggaactgaagctaccctcagctcggctgttagtgcgtcaggctctacgagcagccaa
ggggagcagagcaaccccgcacagtctccgttttcccctcatgcttctccacatctctct
ggcatccctgggggcccatcaccttcccctgtaggctcacctgttggaagcaaccagtca
agatctggtcccatttctccagcgagtattccaggcagtcagatgccaccgcagcctcct
ggcagccagtcagaatccagctcccaccctgccttgagccagtcaccaatgccacaggat
cgaggttttatggcaggcatacagaggaaccctcaaatgtcacagtatggacctcaacaa
actggaccttccatgtcaccacacccctcacctggaggtcaagtgcatcctggaattggt
agctttcagcagagtaattcaagtggtacttatgggcctcagatgagtcagtatggacca
caaggaaactactccagaccaccgacgtacagcggtgtgcccaacacaagttacagtggc
ccaggacccggcatgggtataaatgccaacagtcagatgcatggacaggggccaagccag
ccttgtggttccatgcccctgggacggatgccatcagctgggatgcagagcagaccattt
cctggaaacatgagcagtatgacccccaattctcctggcatgtctcaacagggaggccct
gggatgggcccacccatgccaactgtgaaccgtaaggcacaggaggcggctgctgcagtg
atgcaggctgctgcgaactccgctcagagcaggcaaggcaattttcctgccatgaatcag
agtggcattatgggatccagctctccctacactcagccgatgaacaacagctctggcctg
atgaacccgcaggctcctccttacagcatggcacccaacatggtgaacagctcagcaggt
aatgcacctatgggtcttgcagatatgatgacacctggtgagtccaaacttccccttcct
ctcaaagcagatggcaaagaagaaggagccccccaacccgagagcaagtcaaaggatagc
tacagctctcagggtatttctcagcccccaaccccaggcaacctgccagtcccttcccca
atgtccccaagctctgctagcatctcctcatttcatggagatgaaagtgatagcattagc
agcccaggctggccaaagactccatcaagccctaaatcaagttcctctaccacaactgga
gagaagatcactaaagtctatgagctcgggaatgagccagagcgcaagctgtgggtggat
cggtacctgacgttcatggaggagaggggcacgcctgtggccagtctgccagctgtgggc
aagaagcccttggacctgttcaggctctatgtctgtgtcaaggagatcggaggtttagca
caggttaataaaaacaagaagtggcgtgagctggcaaccaccttgaacgttggcacttcg
agcagcgcagccagctccctgaaaaaacaatacattcagtacctgtttgccttcgagtgc
aagattgagcgaggggaggagccccctccagaagtcttcagcactggagataccaagaaa
cagcctaagattcagccgccatctcctgctaattctggttccttgcaaggcccacagact
ccacaatccactggtagtaattccatgacagaagtgccaggcgatttgaagcccccaaca
ccagcatccacacctcatggacagatgacacctatgcagggtggcagaaacagcgcagtc
agtgtgcatgatcccttttctgatgtaagtgattcagcgttcccaaagcgaaactccatg
acgccaaatgcaccataccagcagggaataaacatgccagatatgatgggaaggatgcca
tatgagccgaataaagatcctttcggtggaatgagaaaagtgcctggaagcaatgagcct
ttcatgacccctggacaaatgcctaacagtggaatacaagatatgtataaccagagtcca
tctggagcaatgtccaacatgagcatgagccagcgacagcagttctcttatggaagtggc
tatgacaggaggcatgaaccatatgggcagcagtatccaggacaaggacctccctcagga
cagccaccatatggaggacatcaacctggaatgtatccacagcagcagaactacaagaga
cacatggatggcatgtatgggcctccagccaaacgccacgaaggggatatgtataacatg
cagtatggcaaccagcagcaggaaatgtataaccagtatggcaacgcttacacagggcct
gacaggaggcccatgcagggacagtacccatacccatataacagggagaggatgcagggc
ccaggacaaatgcagcagcatggaatacctccccagatgattggtggccccatgcagtca
tcgtcctccagtgaaggtcctcagcagaacatgtggccaacacgaaatgatatgccttac
ccttaccagaacaggcaaggtccaggaggccctgcacaggcccccccatatccagggatg
aatcgcactgatgatatgatggtacctgaccagaggataaaccacgagagtcagtggcct
tctcatgtcaaccaacggcagccttcttatatgtcatcctcagcctccatgcagcctatc
actagacctcctcagtcatcctaccagacaccaccctctatgccaaaccacatctccaga
gctccaagtccagcgtccttccagcgctctttggaaaaccgtatgtctccaagcaagtct
cctttcttaccctccatgaagatgcaaaaggttatacccacagttccagtgtcacaggtc
acaggacctccaccccaaccaccaccgattaggcgagagattaccttccccccaggctct
gtagaagcatcccaaccagtcttgaaaccaagacgaaagattacctcaaaagatattgta
actcctgaagcctggagagtgatgatgtctcttaaatctggtcttttggctgaaagtacc
tgggcgctagacactattaatattcttctttatgatgacagcactgttgctactttcaac
ctctctcagttgtctggatttcttgagcttttagtagaatattttagaaaatgcctgatt
gacatttttggaatccttatggaatatgaagtgggagatccaggccacaaagcacttgat
cacaaagcagccaagaaagatgatagtcagtccctggcagaggatactggaaaagatgag
aatgacgaatgtattgactattttgatgaagatgaggaggagggggaggatgaaaaggta
gaaggagaagaaaagagcattgttttttctactcctggtgccattgctgatccaagtgag
aggccaaaacaagcaagtaaatttgacaagctgccaataaagattgtaaagaaaaataat
ctatttgttgttgaccgatctgacaaacttggacgcgttcaggaatttgatagtggactt
ctccactggcagcttggtggtggtgacacaactgagcatatccagactcactttgaaagc
aagatggagattccaccacgcaggaaagcccctcctcccttgaactctccaagcaaaaag
aaggacctcgaggggaaaggtgaatctgaggagcaacaagaaaagagtataacagcaacc
attgatgatgtcctctcagctcggccaggagcactacctgaagactcaaactctggttcc
caaacagagagcagtaaatttcccttcgggatccatcaagccaaaagccaccggaatatt
aaattgctagaggatgagccaaggagccgggatgagactcctctatgcaccataactcac
tggcaagactccttggccaaacgctgcatctgtgtgtcaaatattgtccgtagcttgtct
tttgtgcctggcaatgacaccgaaatgtccaaacatccaggcttggtgctgatcctggga
aagttgatccttcttcaccatgagcatccagaaagaaagcgagcaccgcagacttatgag
aaagaggaagaggaggacaaaggggtggcctgcagcaaggatgagtggtggtgggactgc
ctcgaggtcttgagggataatacattggtcacattagccaacatttctgggcagctagac
ttgtctgcttacacagaaagcatctgtttgccaattttggatggcttgctgcactggatg
gtgtgcccgtctgcagaggcacaggatccttttccaaccgtggggcccaactcagttctt
tcgcctcagagacttgtgctggagaccctgtgtaagctcagtatccaggacaataatgtg
gaccttatcttggccacccccccattcagccgtcaggagaaactctacgctactttagtt
aggtacgttggggaccgcaaaaacccggtctgccgagaaatgtccatggcgctcctatcg
aaccttgcccagggggacacattagcagcaagggcaatagctgtgcagaagggaagcatt
ggaaacttgataagcttcctggaggatggggtcactatggcccagtaccagcagagccag
cataacctcatgcacatgcagcctccgcctctggagccgcctagcgtagacatgatgtgc
agggcagccaaggccttgctggccatggcgagagtggacgagaaccgctccgagttcctt
ttgcacgagggccgtttgctggatatctcaatatctgctgtcctgaactctctggttgca
tctgtcatctgtgatgtactttttcagattgggcagttatga
DBGET
integrated database retrieval system
