Lonchura striata (white-rumped munia): 110471507
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Entry
110471507 CDS
T05897
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110471507 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110471507 (SMG5)
03032 DNA replication proteins [BR:
lsr03032
]
110471507 (SMG5)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
110471507 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
110471507 (SMG5)
DNA replication proteins [BR:
lsr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
110471507 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
110471507
NCBI-ProteinID:
XP_021387868
UniProt:
A0A218UMT9
LinkDB
All DBs
Position
25:complement(3159487..3186628)
Genome browser
AA seq
1049 aa
AA seq
DB search
MSQGGGAAGESGEPEAKVLHTKRLYRAVVEAVHRLDLILGNKAAYQDVFKPENISLRNKL
RELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGI
GFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASEKEMEWAQMACHRCLVYLG
DLARYQNELAGVDTELLAERFYYQALSVAPQVGMPFNQLGTLAGSKYYNVEATYCYLRCI
QSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRGKDIKRLLVSFMYLQSLLQ
PKSSSLDSELTSLCQSVLEDFNLCLFYLPSPPNLSSTSEDEEEYDSGYSFLPDLLIFRMV
IICLMSVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFQSDGTD
EQEPREAVNSIEKEAEAELANHQPSEEQRKNDCKKSKKYSRLSCLRRRRHPQKVDESDLS
EGFDSDSSQSSIKGSDGSESGSEKSDEEAEAAFDVETDSDMNSQESRSDLEDMEDEPGEE
GGSQGKSGPKEALKNCVDSSGLGDSKSPSISKTEAVDPAVNGPASLSTNDASIASNLQAM
STQLFQTKRCFRLAPTFSNILLKPNSEPPALKGGIESKPCVNGDLEKPSLAEQDDVSDSE
ESISSNKSCRNERSLQEKLEIVTNEGLLLTVKVFLDWLRTNTDLIIMCAQSSQSLWNRLS
VLLNLLPSAADLQESGLALCDEVKDILSDAELPDLKANLLLPEDVALRNLPPLKNAHKRF
NFEQDRPIFSAVEESVVRICCIRSFGHFITHLQGSILQFNSELGIFISIAQSEQDSLLHQ
AQAQFHMAAEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCQH
LALVKQLATSGRFIIIIPRTVIDGLDFLKKENAGARDSIRYLEAEFKKGNRYIRCQKDVG
KSFERHKLKRQDLDAWNLYKILDSCKQLTVSQGSGEDDTTGMVTIITGFQLEDPSSFSVP
MQSAIQAAANASIEIKNVLEFYKQWKEMG
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgagccagggtggcggggccgccggcgagagcggcgagccggaggccaaggtgctgcac
accaagcggctgtaccgggcagtggttgaggctgtgcaccggctggatctcatccttggc
aataaggcagcttatcaggatgtgttcaagccagagaacatcagcttgaggaacaagctg
cgggagctgtgcgtgaagctgatgttcctgcatccagtggattatggaagaaaagcagaa
gaactgctctggagaaaggtttactatgaagttatccagctcattaaaacaaataaaaag
cacatccacagccgcagcaccctggagtgcgcgtaccggactcacctggtggctggcatc
ggcttctaccagcacctcctgctctacatccagtcccattaccagctggagctgcagtgc
tgcatcgactggacacacgtgacagaccctctcataggctgcaagaaacccgtgtctgca
tcagagaaggagatggagtgggcacagatggcctgtcaccgatgtctggtttatctggga
gatctagctcgctatcagaatgagctggcaggtgtggacacggagctgctggctgagcga
ttttactatcaagccctttctgttgcaccacaagttggaatgcccttcaaccaactgggg
acattggcagggagcaaatactacaatgtggaagcgacctactgctacttacgctgcatc
cagtctgaagtgtccttcgaaggtgcctatgggaacctgaagcggctgtatgacaaagca
gccaagatgtatcatcagctgaagaaatgtgaaaccaggaagctgtctccaagcaagaaa
cgaggaaaagacattaagaggttgctggtgagcttcatgtacctgcagagtcttttgcag
ccaaagagcagctctttggattctgagctgacatctctctgccagtctgtgctggaggat
ttcaacctgtgcttgttctacctgccctctccgcctaacctgagctcaaccagtgaagat
gaagaagaatatgacagtggctattccttccttcctgatctcctgatctttcgcatggtg
atcatctgccttatgagcgttcacagcctcaagagggcaggttccaagcagtacagtgca
gccattgccttcacactggctctcttctctcacctgataaatcacgtcaatattcgcctc
caggctgagctagaagaaggggaaaatcctgtcccagcctttcagagtgatggcacagat
gagcaggagccacgggaggctgtgaactcaattgagaaggaagctgaagctgagttggcc
aatcatcagcccagcgaggagcagcggaagaacgactgcaagaaaagcaaaaagtactct
cgtctgtcctgcctgcgccgccgccgccacccccagaaggtggatgagagcgacctgagt
gagggctttgactctgactccagccagagctccatcaagggcagtgatggctcagagagt
ggttcagagaagagcgatgaggaagcagaagctgcttttgatgtggagacagactctgac
atgaacagccaagaatctcggtctgacttggaggacatggaggatgaaccgggtgaggaa
ggaggcagccaaggcaaaagtgggcccaaagaggccctaaaaaactgtgtggatagcagt
gggctgggggactccaagagcccaagcatctccaaaactgaagctgtagatccagcagtc
aatgggccagcttccctgagcactaatgatgcaagcatagccagtaatctccaggccatg
tccacccagctgttccagaccaaacgctgctttcgcttggctcccacgttcagcaacatc
ctcctgaaacccaacagtgaaccacctgccttgaagggtgggatagagagcaagccatgt
gtcaatggagatctggagaagcccagcttggcagagcaagatgatgtgtctgactcagaa
gaaagtatttcaagtaacaaatcctgcagaaatgagcgatcccttcaggagaagttggag
attgtgaccaatgaagggctgctgcttactgtcaaggtgttcctggactggctgaggaca
aacacagacctcatcattatgtgtgctcagagctctcagagcctgtggaacaggctgtct
gtactcctgaaccttctgccttcagctgcagacctgcaggaatcagggctggccctgtgt
gatgaagtcaaagacatcctgagtgatgctgagctcccagacctgaaggccaacctgctg
ctcccggaagatgtggccctgcgcaatctcccccctctgaaaaatgcacacaagaggttt
aacttcgagcaggatcggcccattttctcagcagttgaggagtctgtcgtgcggatctgc
tgcattcggagcttcggccacttcattacccacttgcaaggcagcatcctgcagttcaac
tcagagcttgggatcttcatcagcatagcacagtcagagcaagacagcttgttgcaccag
gcccaggctcagtttcacatggctgcagaggaagctcgtcggaacaggctcatgagagac
atggctcagcttcgtctgcagctggaggtgtctcagctggagggaagtctccagcagccc
aaggcacagtcagccatgtctccttaccttgttccggacacccaggccctctgccagcac
ctggctcttgtcaagcagctggccaccagcgggaggttcataatcatcatccctcgaaca
gttatcgatggcctagacttcctgaaaaaggagaacgccggtgctagggacagcattcgg
tatctggaggcagaatttaaaaagggaaacaggtacattcgttgccagaaggatgttggg
aagagctttgagaggcataagttgaagagacaagatttagatgcctggaatctctataaa
atactggacagctgcaaacaactgacagtgtcccagggcagcggagaggacgacaccaca
ggaatggtcaccatcatcacgggcttccagctggaggacccgagctccttctcagtgccc
atgcagtctgccatccaggcagccgccaatgccagcatagagataaaaaatgttctggag
ttctacaagcagtggaaagagatgggctga
DBGET
integrated database retrieval system
