Lonchura striata (white-rumped munia): 110472006
Help
Entry
110472006 CDS
T05897
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X2
KO
K10754
replication factor C subunit 1
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03030
DNA replication
lsr03410
Base excision repair
lsr03420
Nucleotide excision repair
lsr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110472006 (RFC1)
03410 Base excision repair
110472006 (RFC1)
03420 Nucleotide excision repair
110472006 (RFC1)
03430 Mismatch repair
110472006 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsr03032
]
110472006 (RFC1)
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110472006 (RFC1)
DNA replication proteins [BR:
lsr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
110472006 (RFC1)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
110472006 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
Rad17
BRCT_2
RNA_helicase
AAA_30
AAA_5
AAA_17
AAA_33
RuvB_N
AAA_7
nSTAND3
AAA_18
AAA_16
TIP49
AAA_19
NTPase_1
Motif
Other DBs
NCBI-GeneID:
110472006
NCBI-ProteinID:
XP_021388859
LinkDB
All DBs
Position
4:49026838..49060595
Genome browser
AA seq
1142 aa
AA seq
DB search
MHEAFLMTSWRDIRKFFGVVPSGKRQECETVKKSEKIKNGEGPSSGRKREKEAKVNNSPS
EDDSQQKRTKKKRRIIYDSDSEEEVQSVKKSKKPPEKKSATSRPGKVQKQDPVAYISDTD
EDDDFANKRISLKPKENGMSAIGCPGINTGKKEEVKPQAKSKPLSPVKQTPTSALDFFGT
RSVQRSEKKLVASKRKEPSQSRDSTLDDEAIARQLQLEEDSELERQLHEDEEFARTLAML
DETPQKKKARKNTEGEQTVLSINSSPNTTAGYKQSERVKATDSAGAARNYSAKPQTKSEQ
LKGSCLSPQSSDGKQEEIAEKERGAQNSLSRGKTASGKEEKTTPKKERVSPKKTESISPE
DSEKKRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSLI
ERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKIIDEDGLFDLIRTMPGKKSKYE
LAAEAEAKKVESKPKKTPQKAEAGKRNFSPYKREANNKKCKSTPEKGETISSVKKETTAV
RKLTDFKRQTVEEKEAPKPKGNLLSEVNEDGTERLLWVDKYKPVSLKAIIGQQGEQSCAN
KLLRWLRNWHKSTLEDGQAKPSKTGSKDDWTGFKAALLSGPPGVGKTTTAALVCKELGYS
YVELNASDTRSKNSLKEVVAESLNNTSIKDFYSGASSSVSGKHVLIMDEVDGMAGNEDRG
GIQELIGLIRHTKVPIICMCNDRNHPKMRSLVHYCLDLRFQRPRLEQIKGAMMSIAFKEG
LKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVV
RKVFATGEEAARMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSRAA
DSICDGDIVDRQIRSKQNWNLLPTQAIYASVLPGELMRGYMSQFPVFPSWLGKFSSTGKH
DRIIQELAMHMSLRTQTCKRTVNMEYLSYLRDALVQPLKDFGADGVQQAITFMDSYCLMK
EDVENIMEISTWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLSAVKASKRQLGSAAT
LDLSEDLTVEEIQSDEDEQDTVESDAMIKQRKAKSSKLPKREKNEETTKKEGKRKEKTRH
FE
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgcacgaggcgtttctgatgacgagctggagggatatccggaaattctttggtgttgta
ccttctggaaagcgacaagaatgtgagactgtgaaaaagagtgaaaaaattaaaaatggt
gaaggaccctcaagtgggaggaaaagggaaaaggaagctaaggtgaataattcacccagt
gaagatgattcccaacagaagcggacaaaaaagaagagaagaataatctacgattcagat
tcggaagaggaggtgcagtcagtgaaaaaatccaagaagccacctgagaaaaaatcagct
acttcaagacctggtaaagttcaaaagcaggatcctgttgcgtatatttcagacacagat
gaagatgatgattttgccaataaaagaatttccctgaaaccgaaggagaatgggatgtca
gcgattggttgtccaggaataaatactgggaaaaaagaggaggtaaaaccacaagctaaa
agcaaacccctctctccagtgaaacagactcccacctctgcactggatttctttgggaca
aggagtgtccagcgctcagaaaagaagctggtagcaagtaaaaggaaagagccttcacag
agcagagacagcactctagatgatgaggccattgctaggcaactgcagcttgaagaagat
tcagagctggagagacagctgcatgaagatgaagaatttgctagaactctggccatgttg
gatgaaacaccacagaagaaaaaggctcggaagaacaccgaaggagagcaaacagtactg
agcatcaacagcagccctaatacaacagcagggtataagcagtcagaaagagttaaagca
acagactcagctggtgcagccaggaattactctgcgaagccacaaactaaatctgaacaa
ttgaaaggttcttgtttatccccacaatcatctgatggtaaacaagaagagattgctgaa
aaggaaagaggtgctcaaaattcactatcaagaggaaaaacggcttctgggaaagaagag
aagacaacaccaaagaaggagagagtttctcccaagaagactgagtctataagccctgag
gactctgaaaagaagagaaacaattaccaagcttaccgaagcttccttaatcgtgagggt
cccaaagcactgggctccaaagagatacctcagggagctgagaactgcttggagggcctg
acgtttgtaattacgggtgttctggagtgcattgagagagatgaggccaagtctctgatt
gaacgttacggcggaaaagtaactggcaatgtcagcaagaagacaaattacctggtgatg
gggcgagactgtggccagtccaagtgtgagaaggcatcaactttaggtacaaaaattatt
gatgaggatggtctattcgatcttattcgaactatgccaggcaaaaagtcaaaatatgag
ctggcagctgaagcagaggcaaagaaagtggagtcaaaacccaaaaagacaccacagaaa
gctgaagctgggaaaaggaattttagcccctacaaaagggaagcgaataataaaaaatgc
aaatctactcctgaaaaaggagaaaccatcagttctgtaaagaaagaaaccactgctgtt
cgaaaacttacggactttaaacgtcagactgtagaggagaaggaagccccaaaacctaag
gggaacttgctttctgaggttaatgaagatggcacagagagattgctctgggtagataaa
tacaagcctgtatctcttaaagcaattattggacagcagggtgagcaaagctgtgccaat
aaactgctccgatggctcagaaactggcacaagagcaccttggaagatggacaagcaaaa
cccagtaaaactggaagcaaagatgattggacagggtttaaagcagcattactttctggt
ccacctggagttggtaaaactactacagctgctttggtttgtaaggaactgggttatagc
tatgtggagctgaatgccagtgacactcgcagcaagaacagcctaaaggaagtagttgct
gagtcacttaacaacaccagcatcaaagacttctattctggtgcatcttcatcagttagc
ggaaaacatgtattgatcatggatgaagtggatggtatggcaggcaatgaagacagagga
gggattcaggagttaattggcttgatccgacacacaaaggtacccatcatttgtatgtgc
aacgaccgcaaccaccctaaaatgcgctccttggtccactactgtttggatcttcgtttt
cagagacctcgtctagaacagatcaaaggtgccatgatgtctattgcatttaaagaaggt
ttaaaaattcccccacctgctatgcaagagataatcctggcagcaaatcaggacatcaga
caggttttacataatcttaatatgtggtgtgcaaaagacaaatcactgacttatgatgag
gctaaaacagatgccagcagagccaaaaaggacataaaactgggccctttcgatgtggtc
cggaaggtttttgctactggagaggaggctgcccgtatgtctcttatagacaaatcagat
cttttcttccatgattattcattagcacctctctttgtccaagagaactatgtgcatgtg
aaaccagctgctgctggaggtaatttaaaaaagcacttggtactcttgagtagagcagct
gatagtatatgtgatggtgatatagtggacagacagattcgtagcaagcagaactggaat
ctgcttccaacacaggctatttatgcaagtgttctcccaggggagctgatgaggggttac
atgtcccagtttcctgtctttcccagctggttggggaaattttcatccacaggcaaacac
gatcgtatcattcaagaactggcaatgcacatgagtctcagaactcagacatgcaagagg
acagtaaatatggaatatttgtcatatttgcgggatgcacttgtccagcccttgaaagac
tttggagcagatggtgtacaacaagctataacatttatggactcttactgcttgatgaaa
gaagatgtcgaaaatatcatggaaataagcacgtggggaggcaaacccagtcctttttca
aagctggatcccaaggtcaaagcggcttttacacgtgcctacaacaaagaggcacatctg
actccttattcacttagtgctgtcaaggcctctaaaaggcagttgggatctgcagcaacc
ttagatctgagtgaagacttgactgtggaagagatccaatctgatgaggatgagcaggat
actgttgagagtgatgcaatgattaagcaaagaaaggcgaagtcttccaagctgccaaaa
agagagaaaaatgaagaaacgacaaaaaaagaagggaaaagaaaagagaaaacaagacat
tttgaataa
DBGET
integrated database retrieval system
