Lonchura striata (white-rumped munia): 110472060
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Entry
110472060 CDS
T05897
Symbol
DDB2
Name
(RefSeq) DNA damage-binding protein 2
KO
K10140
DNA damage-binding protein 2
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03420
Nucleotide excision repair
lsr04115
p53 signaling pathway
lsr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110472060 (DDB2)
09124 Replication and repair
03420 Nucleotide excision repair
110472060 (DDB2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
110472060 (DDB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110472060 (DDB2)
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110472060 (DDB2)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
110472060 (DDB2)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
110472060 (DDB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_2nd
WD40_RFWD3
PEP5_VPS11_N
Beta-prop_Vps41
NBCH_WD40
Frtz
Motif
Other DBs
NCBI-GeneID:
110472060
NCBI-ProteinID:
XP_021389004
LinkDB
All DBs
Position
5:38953078..38966387
Genome browser
AA seq
463 aa
AA seq
DB search
MAPVNQPKDKKRERACQHWSEEAKSAGKRKRDYGERGNEKQEKKLFVRKASRPSGKIGCS
GGGFVMRNKRVLSSQLERRCSIVHYVYQKMLGGSMQAQLRQRLELAFVRSLSSYCLFRRA
SPFDRRVTCLEWHPTHPSTLAVGSKGGDIILWDCEVLAKTCFIKGKGPGDSLGDIKFSPY
EAEKLYVASGDGTLSLQDLEGRAVQVISRALDCGHEHHNVCCWYCSVDVSASCRAVVTGD
NVGNVVLLSTSGEEVWKLKLHKKKVTHVEFNSRCEWMFATASVDQTVKIWDLRNIKNKTN
FLHLLPHEKPVNAAYFSPTHGAKLLSTDQHNEIRVYSSSDWTKPQHLIPHPHRQFQHLTP
IKATWHPRYDLIVVGRYPDPKFPGYTLNELRTVDVFDGNTGEMVCQLYDPNASGIISLNK
FNPMGDTLASGMGFNILIWNQEEMAAKKHEHLLKAMTNEEIEP
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggctccagtaaaccagccaaaggacaagaagcgtgagagggcatgtcagcattggtca
gaagaagcaaaatcagctgggaagaggaaacgggactatggagaacgagggaatgagaaa
caagaaaagaagttgtttgtgagaaaagcatctagaccctcagggaaaatcggttgcagt
ggaggtggatttgtgatgagaaacaagagagtcctttcctctcagctggagcggcgatgc
agcattgttcattatgtctaccagaaaatgctgggaggctctatgcaagcacagctcagg
cagagattggagctggcttttgtgcgttctctttcctcatactgcctctttcgaagagca
agtccttttgacaggagagtgacatgtctggaatggcacccaacacaccccagtacacta
gctgtcggttccaaaggtggagacataatcctttgggattgtgaagtacttgctaaaacc
tgcttcataaaggggaaagggccaggagattctctcggagacatcaagttcagtccttat
gaggcagagaagctttatgtggcatcaggtgatggcaccctaagtctgcaggatcttgag
ggcagagcggtgcaggtgatctctcgtgccctggactgtggccatgagcatcataatgtt
tgttgctggtactgcagtgtggacgtttctgcaagctgccgtgcagtggtgacaggtgat
aatgtgggcaacgtggtcctactcagcacttctggtgaagaggtctggaaactgaaattg
cataagaagaaagtgactcatgtagaatttaactcccgatgtgagtggatgtttgccaca
gcatctgtggatcagacagtcaaaatctgggacctcagaaacatcaaaaacaaaacaaac
tttcttcatctgcttccacatgagaaacctgtcaatgcagcttacttcagcccaacacat
ggtgccaagcttctgagcacagaccagcacaatgaaatcagggtttactcatcttcagac
tggaccaagccgcagcatctgattccacatccacataggcagtttcagcacctcacacct
attaaggcaacgtggcatcctcgctatgacctcattgtcgtaggtcgctacccagacccc
aagttccctgggtacacgctgaacgagctgcgaactgtggatgtgtttgatggcaacacc
ggcgagatggtttgtcagctctacgatccaaatgcttctgggatcatctcgctcaataaa
tttaaccctatgggagacacactggcctctggcatgggctttaatattctgatctggaac
caggaggagatggcagccaagaagcatgaacatctcttgaaagccatgacaaatgaggag
attgaaccatga
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