Lonchura striata (white-rumped munia): 110472116
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Entry
110472116 CDS
T05897
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04140
Autophagy - animal
lsr04148
Efferocytosis
lsr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110472116 (VPS39)
04148 Efferocytosis
110472116 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
110472116 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsr04131
]
110472116 (VPS39)
Membrane trafficking [BR:
lsr04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
110472116 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Hira
SAM_CEP-1_C
DUF4145
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
110472116
NCBI-ProteinID:
XP_021389171
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All DBs
Position
5:36242742..36264254
Genome browser
AA seq
867 aa
AA seq
DB search
MYWRVCEEEWLLVGTKQGHLLLYRIKKDAGEVMSSESVCCNRFEVTLEKSNKNFSKKIQQ
IHVVSQFKILVSLLENNIYVHDLLTFQQITTISKAKGASLFTCDLQQSDTGEEVLRMCVA
VRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVDGKGSIKEL
FPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAMEHQPPYIIA
VLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHFVWRLIPVSIATQIQQLL
QDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRFDESMQVFAKLGTDPTHV
MGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQKRSQLVKKLNDSDHQSS
TSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEESEHVLKKA
HKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENLHLVFSYSV
WVLRDFPEDGLKIFTEDLPEVEALPRDKVLNFLIENFKSLTIPYLEHIIHVWEETGADFH
NCLIQLYCEKVQGLMKEYLSSFPADRAPVPAGEEGGDLGDYRKKLLLFLEKSSWYEPSRL
ISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENYCHKHYDRNKDGNKDVYL
SLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKLDTTKAINLLPANTQINE
IRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKVCTVCKKKI
GNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgtactggagagtatgtgaagaggaatggctccttgttggtacgaaacaagggcatctc
ctgctttacaggatcaagaaagatgcaggagaggttatgtcatcagaaagtgtctgttgc
aacaggtttgaagtgacactagagaaatccaacaagaacttctcaaagaagattcaacag
atccatgttgtttctcaatttaaaattttggtcagtctattagaaaataacatttatgtc
catgacctgttgacatttcaacaaatcaccaccatttcaaaggcaaaaggtgcatctctc
ttcacttgtgatctccagcaatcagatacaggggaagaggtgctgaggatgtgtgtggca
gtgcgtaagaagctccagctttatttctggaaggacagggagtttcatgaactccaggga
gacttcagcgtacctgatgtacccaagtccatggcctggtgtgaaaactccatctgtgta
ggcttcaagagggactattacctgatccgggtggatggaaaaggatccatcaaagaactg
tttcccacagggaagcagctggaaccattggtagctcctgtagcagatggaaaagttgca
gttggccaagatgatctaacagttgtgcttaatgaagaaggggtctgtactcagaaatgt
gccttgaattggacagatattcctatagccatggagcaccagcctccctacatcattgcc
gttctgccgaggtacgtggagatccgcactttcgagccccggctgctggtgcagagcatc
gagctgcagaggccacgcttcatcacctctggaggcacaaacattatatatgtggcaagt
aatcactttgtttggaggctcattccggtgtccatagccacacagatccagcagcttctg
caggacaaacagtttgagttggctttgcagttggcagaaatgaaagatgattcagatagt
gagaagcgacagcaaattcaccacataaagaacctctttgccttcaaccttttctgccag
aagcgttttgatgagtccatgcaagtttttgccaagcttggtacagatcccactcatgtg
atgggtctgtatcctgacctcctgcccacagattacaggaaacagctacagtatcccaac
cccctgccagggctctctggggcagagctggagaaggcacatttagctctgatagactac
ctaactcaaaaaaggagtcagctagtgaagaagctaaatgattctgatcatcagtccagt
acctcacccctcatggaaggaacacccacaatcaaatccaaaaagaagctgctacaaatc
attgataccaccctgttaaagtgttacctgcatacaaatgtggcactggtggcaccgctg
ctacgtctggagaacaatcactgccatattgaggagagtgagcatgtgctaaagaaagca
cacaagtatagtgagctgataatactgtatgagaaaaaaggtctgcatgagaaagcatta
caggtactggtggatcagtcaaagaaagccaactcacctttgaagggtcatgagaggaca
gtgcaatatttgcagcatttgggcacagagaacttgcacttggtattttcctactctgtc
tgggtgctgagagattttcctgaagatggactgaagatatttacagaagacctccctgaa
gtggaagctttgccacgagacaaagtgctcaatttcttgatagaaaattttaaaagcttg
actattccttacctggaacacatcattcatgtctgggaagaaactggtgcagacttccac
aactgtctgatccagctgtactgtgagaaagtgcagggcttaatgaaagaatatctcagt
tctttccctgcagatagagctccagtgcctgctggggaggaaggaggagacttgggggat
taccggaaaaagctgcttctttttctggagaagtctagctggtatgagcctagtcgactt
attagtgacttcccctttgatggtctcctagaagaacgtgctctgctcttgggtcgaatg
gggaaacatgagcaagctctgtttatttatgttcatatcttgaaggacaccaacatggct
gaaaactactgccataagcattatgacagaaacaaagatggcaacaaagatgtgtacctg
tccctgctgcggatgtatctctccccacccagtgttcattgcctgggacccatcaagatg
gaggtgctggagcctcaagccaatctgcaggctgctctgcaggttttggagctgcaccac
agcaaactggataccactaaggcaataaacctactcccagcaaatacacagattaatgaa
attcgcatcttcttagagaaagtacttgaagaaaatgctcagaagaaaagatttaatcaa
gtgctcaagaaccttctccatgcagagtttctgagggtccaggaggagcggatcttgcat
cagcaagtcaagtgcataattacagaggagaaggtgtgcactgtttgtaaaaagaagata
ggtaacagtgcatttgctcgataccctaatgcaatagtcgtgcattatttctgctccaaa
gaagtcaacacactggacacctga
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