Lonchura striata (white-rumped munia): 110472204
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Entry
110472204 CDS
T05897
Symbol
GRIN1
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1 isoform X2
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04020
Calcium signaling pathway
lsr04080
Neuroactive ligand-receptor interaction
lsr04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
110472204 (GRIN1)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
110472204 (GRIN1)
04082 Neuroactive ligand signaling
110472204 (GRIN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lsr04040
]
110472204 (GRIN1)
Ion channels [BR:
lsr04040
]
Ligand-gated channels
Glutamate (ionotropic)
110472204 (GRIN1)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Rap-GAP_dimer
DUF6724
Motif
Other DBs
NCBI-GeneID:
110472204
NCBI-ProteinID:
XP_021389362
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Position
17:5867253..5907229
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AA seq
988 aa
AA seq
DB search
MSTMRLLLLALLFSSSFARAGCDPKIVNIGAVLSTKKHEQIFREAVNQANKRHGTWKLQL
NATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPAPNDHLTPTPVSYTAGFYRIPVIG
LTTRMSIYSDKSIHLSFLRTVPPYSHQANVWFEMMRVFNWNHVILIVSDDHEGRAAQKKL
ETLLEEKESKSKKRNYENLDQLSYDNKRGPKAEKVLQFDPGTKNVTALLLEAKELEARVI
ILSASEDDAATVYRSAAMLNMTGSGYVWLVGEREISGNALRYAPDGVIGLQLINGKNESA
HISDAVAVVAQAVHDLFEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYSEGVTGRVE
FNEDGDRKFANYSIMNLQNRKLVQVGIYNGSNVLTNDRKIIWPGGETEKPQGYQMSTKLK
IVTIHQEPFVYVKPTQADGTCREEFTINGDPVKKVFCTGPNETIPGRPTVALCCYGFCID
LLIRLAGVMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINN
ERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLD
RFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAM
IIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELST
MYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIG
MRKDSPWKQNVSLAILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVA
GGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQRELRRRSKCIPEHALRTS
GIHFGYPRAVAEPDLVTPSPVGKVTLIGTKAIGEDSLPAPSAERGRAPRPAAPAPWRLVL
PACANQQYHPTDITGQLNLSDPSVSTVV
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccatgcggctgctgctgctcgccctcctcttctcctcgtccttcgcccgcgcc
ggctgcgaccctaagatcgtcaatatcggcgcggtgctgagcaccaagaagcacgagcag
atcttccgcgaggcggtgaaccaggccaacaagcggcacggcacctggaagcttcagctc
aacgccacctccgtcacccacaagcccaatgccatccagatggccctgtccgtctgcgag
gacctcatctccagccaggtctatgcaatattagttagtcaccctcctgctcccaacgat
cacctaacaccaacacctgtatcatacacagctggcttctacaggatccctgtcattggt
ctgacaacacgcatgtctatatattctgataagagcatccatctgtcctttttgcgcacg
gtcccaccctactctcaccaggccaacgtctggtttgagatgatgagagtcttcaactgg
aaccacgtcattctgatagtcagcgacgaccacgagggtcgtgctgcacaaaagaagctg
gagaccctcctggaggagaaagagtccaagagtaaaaaaaggaactatgaaaacctcgac
caactttcctatgacaacaagcgaggacccaaggctgagaaagtgcttcagtttgaccct
gggaccaaaaatgtgacagcgctgctgctggaggccaaggagctggaggccagggtcatc
atcctctctgccagcgaggatgacgcggccacggtgtacagatcagcagccatgctcaac
atgacgggctcgggctacgtgtggctggtgggggagcgggagatctcgggcaatgccctg
cgctacgccccggacggagtgatcggcttgcagctcatcaacggcaagaacgagtcagcc
cacatcagtgacgctgtcgccgtggtggcccaggccgtgcacgacttgtttgagaaggag
aatatcacggacccaccgcggggctgcgtgggcaacaccaacatctggaagacgggaccc
ctttttaagagggtgttgatgtcctccaagtattccgaaggtgtcaccggccgagtggag
ttcaacgaggacggggacaggaagtttgccaactacagcatcatgaacctgcagaatcgg
aaactggtccaggttgggatttacaacggcagcaatgtcctgaccaacgacaggaagatc
atctggccaggcggggaaacggagaaacctcaaggctatcagatgtcaaccaagttgaag
attgtgaccatccaccaagagccctttgtgtatgtgaagcccactcaggcagatgggacg
tgcagggaggaattcaccatcaatggagatcctgtcaaaaaggtcttctgcactggaccc
aacgagaccatcccaggccgtcccaccgtggcactgtgctgctatggcttctgcatcgac
ctgctcatccgcctggcaggcgtgatgaacttcacctatgaggttcacctggtggctgat
ggtaaatttggtacccaagagcgggtgaacaacagcaacaagaaggagtggaacgggatg
atgggggagctgctgagtggccaagctgacatgattgtggctcccctcaccatcaacaac
gagcgggctcagtacattgagttctccaagcccttcaagtaccagggcctcaccatcctc
gtgaagaaggaaatcccccgcagcaccctggactcgttcatgcagcccttccagagcacg
ctctggctgctggtggggctgtctgtgcacgtggtggcagtgatgttgtacctcctagac
cgattcagcccatttggccggttcaaagtaaacagtgaggaggaggaagaagatgccctg
actctctcctcagccatgtggttctcctggggagtcctgctgaactctggcattggagaa
ggtgctccccggagtttctctgcccgtatccttggcatggtgtgggctggctttgctatg
atcattgtggcttcatacactgccaacctggcagctttcctggtgttagaccgacctgag
gagaggatcacgggcattaacgacccccggctgcgcaacccctcggataagttcatctac
gccacggtgaagcagagctccgtggacatctacttccgacggcaggtggagctgagcacc
atgtacaggcacatggagaagcacaactacgagagcgctgccgaagccatccaggcagtg
agggacaacaagctccacgccttcatctgggactcggcggtgctggagttcgaggcctcc
cagaagtgtgacctggtgacgacgggggagctcttcttccgctccggcttcgggatcggg
atgcgcaaggacagcccctggaagcagaacgtctccctggccatcctcaagtcccacgag
aatggcttcatggaggatttggacaagacttgggtgaggtatcaagagtgtgattcccgt
agcaatgccccagcaacactcacctttgaaaatatggcaggtgtgtttatgctggtggct
ggaggtattgttgccgggatatttttaatattcatagagatagcttacaaaaggcataag
gacgcgcggaggaagcagatgcagctggcgtttgcggccgttaatgtgtggaggaaaaac
ctgcagagagaactgagaaggaggagcaaatgtatccccgagcatgctctacgcaccagc
gggatacattttggttacccccgtgcggtagcagagccagacctggtcactccgtccccc
gtcggaaaggtcacactcattggcacgaaagcaattggggaggactcgttgccagcgccc
agcgccgagcgcggccgggccccccggcccgcggcccccgcaccatggcggctggtgctc
ccagcctgcgccaaccagcagtatcaccccaccgacatcactggccagctcaacctctcc
gacccctcagtcagcactgtggtgtga
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