Lonchura striata (white-rumped munia): 110472302
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Entry
110472302 CDS
T05897
Symbol
RNF38
Name
(RefSeq) E3 ubiquitin-protein ligase RNF38
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110472302 (RNF38)
Enzymes [BR:
lsr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110472302 (RNF38)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110472302 (RNF38)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_3
zf-ANAPC11
VPS18_RING_C
zf-RING_UBOX
zf-RING_16
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
110472302
NCBI-ProteinID:
XP_021389537
LinkDB
All DBs
Position
Z:complement(70795081..70903273)
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AA seq
661 aa
AA seq
DB search
MPVAARSAAPGAQPDAGFHAPARQRDRGVAPRGEESGGERHLRQAGEAGRSGRWVASSAA
PFLPAFSSSPPPPPASSVASSPAGGAAVAASTSPSAASLLPALPQTRARVRSCFGFPGLA
MSGGSGRFPPPAALCPPPPLHGPSLPEAGARSQGQGSPAGHGAPRGAPGSRAPPPGSIGP
SFQCHSIHQDHICTDDSDKSEDSPSPKRQRLSHSVFDYTAASPAPSPPMRPWEMTPNRQP
ALARPNQHHFSGERCNTPARNRRSPPVRRQRTRRDRLSRHNSISQDENYHHHLSYGQQQA
IEEPRAFHPPNVSPRILHPAAHPPQQNAVMVDIHDQIHQGTVPVSYAVTTVAPHGIPLCT
GQHIPARSTQQVAGCSVVFSGHHRPVCSVSPTMLQACSVQHLPVPYAAFPPLISSAPFLL
HPPHIHTHHPPHLPPPGQFVPFQAQQSRSPLQRIENDVELLGEHLPVGGFTYPPSAHPPT
LPPSAPLQFLAHDPLHQEVSFGVPYPPFMPRRLTGRSRYQSQQPIPPHPYHPSLLPYVLS
MLPVPPAVGPPFSFELDVEDGEVENYEALLNLAERLGEAKLRGLTKADIEQLPSYRFNPN
NHQSEQKLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDS
E
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgccggtggccgcccgctcggcagcccccggggcgcagcccgacgccggctttcacgcc
cctgcccgccagcgggaccgcggcgtcgctccgcgcggcgaggaaagcggcggcgagcgg
cacctccgtcaggccggcgaggcgggccggagcggcagatgggtggcttcttccgccgcc
cccttcctgcctgccttctcctcctcccctccgccgccccccgcctcctccgttgcctcc
tcccccgctggtggggccgccgtcgccgcctccacctccccctcggctgcctcccttctc
ccggcactcccccagacccgcgcccgtgtccgctcctgcttcggcttcccgggactcgcc
atgagcggcggttccggtcgctttccgccgcccgccgccctctgcccgccgccgcccctc
cacgggccgagcttgccggaggcgggagcgcggagccagggccagggcagccccgccggg
cacggcgcaccccgcggcgccccgggctccagagccccgccgccaggtagtattggtcca
tcgtttcaatgccactcaatccatcaagatcacatttgtactgatgacagtgacaagagt
gaagacagccctagtcccaagcgacaacgcctttcccattcagtcttcgactacacagca
gcatcaccagccccatcaccaccaatgcgaccatgggagatgacaccaaataggcagcct
gctttggctcggcccaaccaacaccacttctcaggggaacgatgcaacacacctgcacga
aacaggaggagtcctcctgttcgacgacagagaacaaggagagatcgtttgtctagacat
aattccattagccaggatgaaaactatcatcaccatctctcctatggacagcagcaagca
atagaagagcctcgagcctttcacccaccgaatgtatctcctcgtatcttacacccagct
gctcacccaccacagcagaatgcagtgatggttgacattcatgatcagatccatcagggc
acagttcctgtttcatatgcagtgacaactgtggctccacatgggatacccctttgcaca
ggccagcacattccagcccgcagcacgcaacaggtcgcagggtgctcagtggttttcagt
ggccatcaccgtccagtctgcagtgtgtctcccacaatgcttcaggcgtgctcagtccag
caccttcctgtaccatatgcagcatttccacccctcatttctagtgccccattccttttg
catcctcctcatatccatacacaccaccctcctcacttacctcctccaggacagtttgtt
cctttccaagcacagcagtcacggtcgccacttcaaagaatagaaaatgatgtagaattg
cttggagaacatcttcctgtaggaggttttacataccctccctcagcccatccaccaacg
ttgcctccctcagctcctcttcaattcttagcccatgatccattgcaccaggaggtgtca
tttggggtaccttacccaccttttatgcctcgaagactcacagggcgcagcagataccaa
tcacagcagccaataccaccacacccttaccatcccagcctattaccttatgtgctatca
atgctcccagtgccaccggcagttggaccacctttcagctttgagttggatgtggaagat
ggagaggtagaaaactatgaggcactgctgaacttggcagaacgtctgggagaagccaaa
ctacggggattaacaaaagcagacattgagcagcttccatcctacaggttcaatccaaac
aatcaccagtcagagcagaaattatgtgtggtgtgcatgtgtgattttgagtcaaggcag
ctacttagagtcttaccgtgtaaccacgagttccatgccaaatgtgttgataagtggctg
aaggcaaatcgtacctgcccgatttgtagagctgatgcttcagaagtgcatcgtgattca
gaatga
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