Lonchura striata (white-rumped munia): 110472551
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Entry
110472551 CDS
T05897
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110472551 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110472551 (MTREX)
03041 Spliceosome [BR:
lsr03041
]
110472551 (MTREX)
03009 Ribosome biogenesis [BR:
lsr03009
]
110472551 (MTREX)
03016 Transfer RNA biogenesis [BR:
lsr03016
]
110472551 (MTREX)
Enzymes [BR:
lsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110472551 (MTREX)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110472551 (MTREX)
Spliceosome [BR:
lsr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110472551 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
110472551 (MTREX)
Ribosome biogenesis [BR:
lsr03009
]
Eukaryotic type
Pre-60S particles
Helicases
110472551 (MTREX)
Transfer RNA biogenesis [BR:
lsr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110472551 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
110472551
NCBI-ProteinID:
XP_021389984
LinkDB
All DBs
Position
Z:42217601..42261846
Genome browser
AA seq
1034 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAASGTKKSKASPAEGARRPGKRVEEKPAVPAAIVKPKREVE
DSTENVILGKKPKLEDVLSEDVNLIDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGDD
YGWGVVVNFSKKSNVKPNSSELDPLYVVEVLLHCSKDSLKNSATESAKPARPDERGEMQV
VPVLVHLVSAISSVRLYIPKDLRPIDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggccttcggggatgagctcttcagcgtgttcgaggaggacgcggccgccgct
gcttctggcaccaagaagagcaaagcgagccccgccgaaggtgccaggaggccgggaaaa
cgagtggaagaaaaacctgcagtaccagcagcaatagtcaagccaaaaagggaagttgag
gatagtactgaaaatgtcattttgggaaaaaaaccaaaactggaagatgttttatcagaa
gatgttaatctgatagatctgatgcctcaagtaaaggtgcagtctgtggaaacggttgaa
ggttgtacgcatgaggttgcacttccagcaaatgaagaattcacaggtctgaagccaaga
actggaaaagctgcaaaagaatatccatttattcttgatgccttccagagggaagctatt
ctttgtgtagataataaccagtctgtgttggtgtcagctcatacatcagctggtaaaact
gtttgtgctgagtatgcaattgccctggctttaagggaaaagcagcgcgtgatatttaca
agtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtttggtaatgaca
actgagatcttgagaagtatgctttacagaggttctgaggttatgcgtgaagtcgcatgg
gttatttttgacgaaattcactacatgagagatacagaacgtggcgtggtttgggaagag
actattattttgcttcctgataatgtacactatgtgttcctttctgcaactattccaaac
gcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttac
actgactatcgacccactccactgcagcactatatatttccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaa
gtgcttagagatgcaggagacttagcaaaaggggaccagaaaggcaggaaaggaggaaca
aaaggtccttcaaatgtttttaagattgtgaagatgataatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgtgaagcttatgcacttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgcaatt
gattgtctctcagatgaagacaaaaagcttcctcaggttgaacatgtgcttccccttctg
aagcgaggaattggtattcatcatggtggtttgcttcctatcttgaaagaaaccatagaa
atccttttctcagagggccttataaaggccttatttgcaacagagacatttgctatggga
attaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatggaaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggt
atggatgatagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcccttaaacagtgctttccacctgacatacaac
atggtattgaacttacttcgagtagaggaaattaaccctgaatacatgttagaaaaatca
ttttatcagttccaacattacagaactattccagaaatagtggaaagagtcaataatttg
gaagcacagtacaacaaaattgtaattcccaatgaagaaaatgtggttatatactacaga
atccgccagcagcttgcaaaactgggtaaagatattgaagagtacattcacaaaccaaag
tactgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgatgac
tacggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattccagt
gaattggacccattgtatgtagttgaagtgctcctgcactgcagcaaagacagtttgaaa
aattctgcaactgagtctgcaaaaccagccagacctgatgagagaggagagatgcaggtt
gttcctgttttggtgcatcttgtctcagctatcagcagtgtccgactctacataccaaaa
gacctgaggcctattgataacaggcagagtgtgttaaaatctgtacaggaagtacagaaa
cggtttcctgatggagtgcccttactagaccctattgatgacatgggcatcaaagaccaa
gggttgaaaaaagtaatccaaaaaatagaggcatttgagcacaggatgtattcacatcct
cttcacaatgatccaaacttggaaaccatatacaaactttgtgaaaagaaagcacagatt
gctatggatattaaagtggcaaagcgagaactgaagaaagccagaactgtcctgcaaatg
gatgagctcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcttcagat
gttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgagctactcctt
acagaaatgatgttcaatggtctcttcaatgatttgtctgcagaacaggcaactgcactt
cttagctgtttcgtgtttcaagagaattccagtgaaatgccaaaattgactgagcagctg
gcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtatcagcagaa
gcaaaactggaaattgatgaagaaaattatttgaattctttcagacccaacctaatggat
gttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgacagatgtc
tttgaaggtagcataattcgttgcatgaggcgtctagaagaacttcttcggcagatgtgc
caggctgcaaaagccattgggaacacagaactggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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