Lonchura striata (white-rumped munia): 110472709
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Entry
110472709 CDS
T05897
Symbol
WDHD1
Name
(RefSeq) WD repeat and HMG-box DNA-binding protein 1
KO
K11274
chromosome transmission fidelity protein 4
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsr03036
]
110472709 (WDHD1)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
110472709 (WDHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
Mcl1_mid
Beta-prop_THOC3
Beta-prop_WDR5
Ctf4_C
HMG_WDHD1
WD40
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR3_2nd
EIF3I
ANAPC4_WD40
WD40_Gbeta
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Tricorn_2nd
Beta-prop_WDR36-Utp21_1st
HMG_box
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_HPS5
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_WDR41
NBCH_WD40
Beta-prop_WDR75_2nd
HMG_box_2
Beta-prop_SCAP
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
110472709
NCBI-ProteinID:
XP_021390330
LinkDB
All DBs
Position
5:complement(3358087..3384077)
Genome browser
AA seq
1103 aa
AA seq
DB search
MVCCIVTCGSDGDVRIWENLDDDDPKSINVGEKAYSCALKNGRLITAVSNNTVQIHTFPE
GAPDGILTRFTMPVNHVTFSPDGTKVAAGSGDFMIKVVEVADSSKQKTFRGHDAPVLSLS
FDPKDVYLASASCDGSVRVWNIADQTCTTSWLLLQKCNDVINAKSICRLAWQPGTGKLLA
VPVDKVVKLFRRETWDSQFDLSDASITQPLNVVVWSPCGQFLAAGSVDGNLVVWNVETQQ
CIERMKHEKKYSICGLAWHPKYKQIAYTDNEGNLGLLENIGDVEKPNDKVASAVAKDYND
LFDGDDDDYFNGDMIEPPSSPKTGDNEDDADDLMQPPGHMRRALIDDDDDNSLDIGLIKA
SSGLLEKEDDGDDQPGGFSALPPSSTQQPFYDGPMPTPRQKPFQSASTPVHLMHRFMVWN
SVGIVRCYNDEQDNAIDIEFHDTSVHHATHLPNSLGHTMADLSTEAILLACESTEELGSK
LHCIHFGSWDANKEWTVDMPKDEEIEAICLGQGWAACATTALLVRVFTVGGVQKEIFSLP
GPVVSMAGHGEQLMIIYHRGTGFDGDQCLGVQLMELGMKKRQILHGDPLSLTRKSYLVWV
GFSAEGTPCYVDSEGIVRMLNRGFGNTWIPVCNTREHCKGKYDHYWVVGIHENPQQLRCI
PCKGARFPPTLPRPAVAILPFKLPYCQVETEKGQMEEQYWRSVLFHSYVDYLSKSGYEFD
ENAKNQAVKEQQELLMKLFALSCKLERESRCVELAELMTHSVLNLAIKYASRSRRLNLAQ
LLSGVAVEKASELAAAQEDEEEEEEDFRKRSSAGSSSSATKWGQLPGRNVQQDQEVEDAE
DTDACEEAEETPEVHKEKEPNCFSKVVPSAEVTTPKPALVASSSRGRVNPFKVSSSKKDP
VVPSGNVLDNMTKYSKKTSLSGSRAVDKQNPSVIKPLTPKPKTKQASAASFFQPRTPATN
PGEKTVEEREEKAGNESQEAKVTAQENTENRRPKTGFQMWLEENRANILTDNPDLNEAEV
IKEGMSRFRMLTSEERMVWTEKAKGGRVSDSAEDKKRKRPTAEEDEVEKSQEQKSEDTNA
SKKSKPLDPSPNNRLSAFAFKQS
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggtctgctgcattgtgacttgtggcagtgatggagatgtcaggatctgggaaaacctg
gatgatgatgatccaaagtccattaatgtgggagaaaaggcctactcgtgtgctctaaag
aatggaaggctgatcacagcagtgtccaacaacactgtccagatccacacatttcctgag
ggagctccggatgggatcctcactcgtttcaccatgcccgtcaaccatgtcacctttagt
cctgatggcaccaaagttgctgctggatccggtgactttatgatcaaagttgtggaggtg
gctgatagcagcaagcagaaaacattccgaggacacgatgctcctgttttaagcctgtct
tttgaccccaaggatgtttacctggcctcggcgagctgtgacggttctgtcagagtctgg
aacattgcagatcagacatgcacgacaagctggctgctgctgcagaaatgtaatgatgta
ataaatgctaaatcaatctgcaggcttgcctggcaacctggcactggcaagctgctggca
gttcctgtagataaagttgttaaactgttcagaagagagacctgggatagtcagtttgat
ctgtcagatgcctccatcacccagcctttgaatgttgtggtctggtctccttgtgggcag
ttcctggcagctggaagtgtggatgggaatttagtggtgtggaatgtggaaacccagcag
tgcatagagaggatgaagcatgagaaaaaatactcaatttgtggactggcatggcaccct
aaatataagcaaattgcttacacagacaatgaaggaaatctggggctgctggaaaatatt
ggtgatgtagagaagccaaatgacaaggttgccagtgcagtggccaaagactacaacgat
ctgtttgatggagatgatgatgattattttaatggggatatgattgaaccaccttcttcc
ccaaaaactggagataatgaggatgatgctgatgaccttatgcaacccccaggccatatg
agacgggcactaattgatgatgatgatgataactcactagatattgggttgataaaagct
agttctggtcttcttgagaaggaggatgatggtgatgatcagcctggtggcttttcagct
ttgccaccatcatctacacaacagcctttctatgatgggccaatgccaacccccaggcaa
aagcctttccaatctgcctccactcctgtgcatctgatgcatcgattcatggtgtggaat
tcggttggaatcgttcgctgctacaacgacgagcaggacaacgccatagacatcgagttc
cacgacacctctgtgcaccatgctactcacctccccaactccctgggccacaccatggct
gacctctccactgaagccattctgctggcctgtgagagtacagaggaacttgggagcaag
ctccactgcatccattttggatcctgggatgccaacaaggagtggactgtggatatgcca
aaggatgaagagattgaggccatctgcctaggccagggctgggctgcctgtgccaccact
gccctgctggtccgtgtgttcacagttggaggagtccagaaagagatcttcagtctccca
ggcccagtggtgtccatggcagggcatggagagcagctgatgattatttatcacagaggt
actggctttgatggggaccagtgccttggggtacagctgatggagctaggaatgaagaaa
aggcaaattttgcatggagaccctctttctctgacaaggaaatcctatttggtgtgggtt
ggattctctgcagaaggtaccccttgttacgtggattccgagggaatcgtgaggatgctg
aaccgaggatttgggaacacttggattccagtgtgcaacaccagagagcattgcaaaggg
aaatatgatcattactgggtcgttggcatccatgaaaatccccagcagctcaggtgcatc
ccttgcaaaggagcccgcttccctcccaccctgccacgacctgctgtagcaatcctgcct
tttaaacttccttactgccaagttgaaacagagaagggacagatggaggaacagtactgg
cgttcagttttatttcacagctacgtggattacttgtcaaaaagtggctatgaatttgat
gaaaatgctaaaaatcaggcagtgaaagaacagcaggaacttctaatgaagctgtttgct
ctttcctgcaagctggagcgcgagtcgcgctgcgtggagctcgctgagctcatgacccac
agcgtgctgaacctggccatcaaatacgcctcccgctcccgcaggctgaacttggcccag
ctcctcagcggggtggctgtggaaaaagcctcagagctggcagcagcacaggaagatgag
gaggaggaggaagaggatttccgaaagcgctcgagcgctggttccagcagttctgccacc
aagtggggtcagctgccaggcaggaatgttcagcaggaccaagaagtggaagatgctgaa
gacactgatgcctgtgaggaagcagaagaaaccccagaagtgcataaagagaaagagcca
aattgtttctctaaagttgtcccttcagcagaggtgactactccaaagcctgctctggtt
gcatccagcagcagaggacgagtgaatccgtttaaggtgtcatccagcaaaaaggaccca
gtggtcccctcaggaaatgttttagacaacatgaccaaatactcaaagaaaacatctttg
tctggcagtcgagctgtagacaagcagaacccttcagttataaagcctctgactcccaaa
cccaagaccaagcaggcttcagcagcctccttcttccagcctcgcacacctgcaactaat
cctggtgaaaaaacagtggaagaaagagaagaaaaagcaggaaatgagtcccaagaagcc
aaagtcactgcacaggaaaacactgaaaacagaagaccaaagacaggtttccagatgtgg
ctagaagagaacagagcaaacattttgacagataatcctgatctgaatgaagcagaagta
ataaaagaaggaatgagtcgatttagaatgctgacatcagaggaaaggatggtgtggact
gagaaagcaaaaggaggaagagtcagtgactcagcagaagacaaaaagcggaagcgtccc
acagctgaggaggatgaagtggaaaagagccaggagcagaaatccgaggacacaaatgca
tccaaaaaatccaagcctttagacccatccccaaacaacagattgtcagcttttgccttc
aagcagagctag
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