Lonchura striata (white-rumped munia): 110473346
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Entry
110473346 CDS
T05897
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110473346 (TNRC6C)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110473346 (TNRC6C)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110473346 (TNRC6C)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110473346 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
RRM_1
UBA
RRM_occluded
DUF4718
THOC7
Motif
Other DBs
NCBI-GeneID:
110473346
NCBI-ProteinID:
XP_021391475
LinkDB
All DBs
Position
18:8979819..9077057
Genome browser
AA seq
1985 aa
AA seq
DB search
MEEKKKKKQEEKKKKEGAQKKAAEQKTKVPEPIKTSLSQPQPAGTGTSTSTSTLTNSSNG
KRASANGQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPAGALSAPGPAPGTAAAGASP
PPPPPPPPPPPPPQQGAAAQQHPGKAQPDLSHSGLGDHYENSHWGQQPAFRSEGNCSWDK
VIIDRTDKEAWPSITGAETESASECTTDTDSASNCGSENSSMATGSAQGNFTGHTKKTNG
NNGANGALVQSTSNQSALGAGGANGNGGSARVWGVAAGSSSGLAHCSASGGDGKMDNMMG
DGRSQNCWGASNSNAGINLNLNPNANPAAWPVLGHEGTVGAGNPSSICSPVSAIGQNMGN
QNGNPTGTLGAWGNLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPMNSSPNPINA
MQTNGLPNWGMAVGMGAIIPPHLQGLPGANGTAVSQVSGGSGEGMGSSVWGMSPGNPAAG
NSNSGFSQGNGDTVNSALSAKQNGSSSAVQKEGNGANAWDSGPPSGPGVLAWGRGGGGVG
SVHSGAWGHPNRSASNGVNGEWGKPPNQHSNSDINGKGSTGWDSSSVTSPNPAMQQGNEQ
MNSWAKAAASGTTASEGSNDSGGSQNEGSTGRDGAGEGRRRDKGMIDQGQVQLPRNDLDP
RVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWGCAATQSSNSGGKNDGSIMNST
NTSSVSGWVNSPPAAVPTNTGWGDNNNKAPNGPGGWGESASSTTVNNAAAAKSGHAWSGT
ANQEDKSPTWGEPQKPKSQNWGDGQKSNPSWTSGGGDWTDSSSVPGHLGDGKKNGSGWDS
DNRSGSGWNDSTKSGTSGWGNGTNSKANTGTSWGESLKPGPQQNWANKPQDNNVSNWGGA
ASVKQTGSGWVGGPVPAKQKENCEATGWEEPSPPSIRRKMEIDDGTSAWGDPNYNNNKTV
NMWDRNNPIIQSSTTTNTTTTSTIINSNMVEPQPSHQSSAQPNRSPLLGPAGWGEMPAVH
TKSEASWGEPSSPSAAVDNGTSAWGKPPSSGTGWGENPAEPAGTYGRTNAPAAAPALCKP
ASKSMQEGWGSGGDEVNLSTSQWEDEEGDMWNNTASQESSSSCNSWGNAPKKGLQKPKTN
PRLSLGTFWRTERKRLLKDFVIEKLHRDLLKGMKTSSKQDEAWIMNRLIKQLTDMGFPRE
PAEEALKSNSMNLDQAMSKYLCALLEKKVEMDKRGMGVTDYNGMVTKPLGCRPPPISKES
SMDRPTFLDKLTLSFSNQDGGLVEEPTTSPFLPSPSLKLPLSNSALPNQTLGGIASGLGM
QNLNSSRQIPSGNLGMFGNSGAAQARTMQQPQQPPVQPLNSSQPSLRAQVPQFLSPQVQA
QLLQFAAKNIGLSPAQLTSPINNPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPM
RQQEQQVARTINNMQQQIQQHQRQLAQALLMKQQPPPPHLSLHPSAGKSAMDSFSPHPQA
PGLPDLQTKEQQSSPNTFAPYPLAGLNPNMNVNNMDITGGLSVKDTSQSQSRLPQWTHPN
SMDNLSSAASSLDQNSSKHGAIPGGLSIGPPGKSSLDDSYGRYDLIQNSESPASPPVAVP
HSWSRAKSDTDKISNGSSINWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTI
QDVNRYLLKSGGSSPTSSQNATLPSSSAWPLSASGYSSSFSSIASAPSIAGKLSDIKSTW
SSGPISHTQASLSHELWKVPRNTTAPTRPPPGLTNTKPSSTWGASPLGWTSSYSSGSAWS
TDSSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKA
QKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPPTSSWQSNTGSTPSRLGSSGSSHGL
VRPDAGHWNPPCLGGKGSSDLLWGGVPQYSSSLWGPPSADDGRVIGSPTPLNTLLPGDLL
SGESI
NT seq
5958 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaggaagaaaagaaaaagaaggaaggtgctcagaaa
aaggctgctgaacaaaaaaccaaagtgccagaacctattaagaccagtttaagccagccc
caacctgccggtaccggtaccagtacttccaccagcactctcaccaacagcagcaatggc
aagcgcgcgtctgccaacgggcagcagccggcggcgtcccgatacctgccccgagaggtg
cctccccgcttccgccagcaggagcagaagcagctcctaaagcgggggcagccgctgccc
gccggggcgctcagtgcccccggcccggcgccgggcacggccgccgcgggagccagccct
cctcctcctcctcctcctcctcctcctcctcctcctcctcagcagggagcagcagcgcag
cagcatcccggcaaggcgcagccagatctcagccacagtggattgggagaccattatgag
aattcccactggggacagcagcccgctttcaggagtgaaggcaactgcagctgggataaa
gtgataatagacaggactgacaaggaagcgtggccttccattaccggagctgagactgag
tctgcctcagaatgtactacagacactgactctgcctccaactgtggctcagagaacagt
agcatggctacagggagtgcccaaggcaacttcactggacatacaaagaaaactaatggc
aataatggcgccaacggagcactcgtccaaagcacttctaaccagagtgcccttggagct
ggtggagcaaacggcaacggcggctcggccagggtgtggggggtggctgcgggctccagc
tctggcctagctcactgctctgccagtggtggggatggaaagatggacaacatgatggga
gacggtagaagtcagaactgctggggtgcttccaactcgaatgctggcattaatcttaac
cttaaccctaatgccaatccagctgcctggcctgtacttggacatgaaggaactgtggga
gcaggcaacccttccagtatttgcagtccagtcagtgccataggtcagaacatgggcaac
cagaatgggaacccaacaggcaccttaggtgcttggggaaacttgctgccgcaagagagc
acagaaccacaaacgtccacttctcagaatgtgtctttcagcgtacaacctcagaacctt
aacactgatggaccaaataacactaaccccatgaactcttcaccaaaccctatcaatgca
atgcagacaaacggactgccgaactgggggatggccgtgggcatgggggccatcatcccg
ccccacctgcaaggccttcctggtgctaacggaacagcggtttctcaagtcagcgggggc
agtggtgaaggaatgggcagttcagtatgggggatgtccccaggtaatcctgccgcagga
aacagcaattctgggttcagtcaggggaatggagacactgtgaactcagcattaagtgct
aaacaaaacggatccagcagtgctgtgcaaaaggaagggaacggagcgaacgcctgggac
tcggggcctccctctggccccggggtcctggcgtggggcaggggtggcggcggggttggc
agtgtgcattcgggagcctggggccaccccaaccgcagcgccagcaacggtgtcaacggg
gagtggggcaagcccccgaaccagcattccaatagcgacatcaatgggaaaggatcaaca
gggtgggatagctcgagtgttaccagtccgaatcctgccatgcagcagggcaatgaacaa
atgaactcttgggccaaagctgcagcatctggcaccacggctagtgaaggaagcaacgac
agcggtgggagtcaaaatgaaggcagtactgggagggacggggctggagagggcaggagg
agagacaaagggatgatagaccaagggcaagttcagttgccaagaaatgaccttgacccc
agggtcctgtccaatacggggtggggacagacccctgtgaagcaaaacactgcctgggaa
tttgaagagtccccaaggtctgaacggaagaatgacaatggaactgaggcctggggttgt
gcagctactcaatcttcaaactcaggggggaagaacgatgggtccatcatgaacagtaca
aatacctcttcagtatctgggtgggtcaactctccaccggcagctgttccaacaaataca
ggttggggggacaataacaacaaagcaccaaatggcccaggggggtggggagagtcagca
agctctactactgttaataatgctgctgctgccaaaagcggccacgcctggagtgggacc
gcaaatcaggaggacaaatcacctacctggggtgaacctcagaaacccaaatctcaaaac
tggggagatggacagaaatcaaatccaagctggacttcaggaggtggagactggacagat
tcatcatctgttcctggacacttgggtgatgggaagaagaatggatctggatgggattct
gataatagatcggggtctggctggaatgattccacaaagtctgggaccagtgggtggggg
aatggcacaaacagcaaggctaatacaggtacaagttggggggaatctttaaagccaggc
ccccaacaaaattgggctaataaaccccaggacaacaatgtgagtaactggggaggagct
gcttctgtaaaacagacggggtcagggtgggttggtgggccagtgccagccaaacaaaaa
gagaactgtgaggcaactggctgggaagagccatctccaccgtccattcgccgcaagatg
gaaatcgatgatggtacctcagcttggggcgacccaaattacaacaacaacaagactgta
aacatgtgggatagaaataatcctataattcagagcagtaccacaaccaacaccaccacc
actagcaccattatcaacagcaacatggttgaacctcagccatcgcaccagtcaagtgcc
cagccaaaccggtccccgctgcttggcccagcaggctggggagagatgcctgctgtccac
accaagagcgaagcttcctggggagagccctcctccccttctgctgcagttgataatggc
acttcagcctgggggaagccccccagcagtggcacgggctggggagagaatcctgccgag
ccagcagggacctatggaagaacaaacgctccagctgctgccccagcactgtgcaaacca
gcttcaaaatctatgcaagaaggctggggcagtggtggggatgaagtgaatctcagtact
agtcagtgggaagatgaagaaggagatatgtggaataatactgcttcacaagagagcagc
tcctcctgtaattcctgggggaatgccccgaagaaaggacttcaaaagcccaaaacaaat
ccgcgcttgtcccttggtactttctggagaactgaaaggaagagacttcttaaggatttt
gtgatagaaaagctgcacagagatcttttaaagggcatgaagacatctagcaagcaggat
gaggcctggatcatgaaccgtctgataaaacagctcacagacatgggcttccctagagag
ccagcggaagaggccttgaagagcaacagtatgaatcttgatcaggccatgagtaagtat
ctgtgtgctctgctggaaaagaaggtggaaatggacaagcgtggaatgggagtgaccgat
tataatggaatggtcaccaaaccccttggctgccgcccaccaccaatctccaaagagtct
tccatggaccgccccaccttccttgacaagctcaccctttctttctccaatcaggatggc
ggcctagtggaagagcccactacttcaccatttttgccttcaccaagcctgaagctcccc
ctttcaaacagtgcactccctaatcagaccctgggcgggattgcctcagggctgggcatg
caaaacttgaattcttctagacagataccgagtggcaatctgggtatgtttggcaatagc
ggagcagcacaagccaggaccatgcaacagccgcagcaaccgccagtgcaacctcttaat
tcatcccagcctagtcttcgtgctcaagtgcctcagtttctatcccctcaggttcaagca
cagcttttgcagtttgcagcaaaaaacattggtctcagccctgcacagttaacctcgcca
attaataatcctcagcatatgacgatgttgaaccagctctatcagctgcagctggcgtac
caacgtttacaaatccagcagcagatgttacaggctcagcgtaacgtttccggacccatg
agacaacaggagcagcaagttgcacgtacaatcaataacatgcagcagcagatccagcag
caccagcgccagctggcccaggccctgctcatgaagcagcagcctccccctccacatcta
tctttgcacccctctgcaggcaaatcagccatggatagcttttcaccccatccccaggct
cccggccttcctgacctgcagaccaaagagcaacagtcttcaccgaacacctttgctcct
taccctcttgctggactgaacccgaacatgaatgtaaataacatggacattactggtggt
ttgtcagtgaaggacacttctcagtcccagtctcgccttcctcagtggacacaccccaac
tcaatggataatctgtctagtgctgcttcttctcttgaccagaactccagcaagcacggt
gctatccctggaggtttgagtattggtcctccgggaaagtcctccctcgatgactcctac
ggccgctatgatctgatccagaacagcgagtctcctgccagcccgcccgtagctgttcct
cacagctggtcacgtgccaaatccgatactgataagatttccaatggctccagcatcaac
tggccaccagagtttcacccaggagtgccatggaaaggactgcagaatattgatcctgaa
aatgaccccgatgttactcctggcagtgttccaactgggcccaccataaacaccacaata
caggatgtgaatcgctatctgctcaagagtggagggtcatccccaacatcatctcagaat
gccacgctgccttcatcgagtgcctggccgcttagtgcctccggctacagtagctctttc
agcagcattgcatctgcacctagcattgcaggtaaactgtcagacatcaagtccacgtgg
tcctctggcccaatctctcacacccaagcctctctgtcccacgaactctggaaggtaccc
agaaacactacagctccgaccagacctcctccaggcctaaccaacaccaagccatcctcc
acgtggggtgccagtcccctgggctggaccagctcttactcctctggttctgcatggagt
actgacagctcagggagaacaagcagctggctggttcttcggaacctcaccccccagatc
gatggctccacactgcggaccctgtgtttgcagcacggccctctcatcacattccacttg
aacctgacccaagggaatgctgtggtccgatacagttccaaggaggaagcagccaaggcc
cagaagtctctgcacatgtgcgtgctgggcaacaccaccatcctggcggagtttgctggt
gaggaagaagtgaaccgtttcctggcgcaggggcaggcgctgccgcccacctccagctgg
cagtccaacactggatccaccccgagccgcctgggctcctcgggcagctcccacgggctg
gtgcgccccgacgccggccactggaaccccccgtgcctggggggcaagggcagcagcgac
ctgctgtggggaggggtgccccaatactccagcagcctttggggaccccccagcgccgac
gacggcagagtcatcgggagccccacgcccctcaacaccctcctgccgggggatctgctc
agcggggagtccatctag
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