Lonchura striata (white-rumped munia): 110473637
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Entry
110473637 CDS
T05897
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsr03009
]
110473637 (PDCD11)
Ribosome biogenesis [BR:
lsr03009
]
Eukaryotic type
90S particles
Other 90S particles
110473637 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
Spt6_S1
OB_RRP5_4th
HAT_PRP39_N
Suf
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_C
OB_RRP5
TPR_19
UTP6_C
TPR_15
ARM_TT21_5th
TPR_CcmH_CycH
ARM_TT21
TPR_12
TPR_16
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
110473637
NCBI-ProteinID:
XP_021391992
LinkDB
All DBs
Position
6:23351524..23376019
Genome browser
AA seq
1834 aa
AA seq
DB search
MASMEENFPRGGIQKKPAEGKTCKPKSERDNLFDVQHEEKSQKRKRSQKDQEKQKRFKAD
KTVKADVKDNIMKIGPLTVEALSEGMLLLGCIKEVSDYELAISLPNGLSGFVPVTQISDA
YSKLLTKQVAQGEVPEELNSLPDMFSPGTLVRCAVTSIEKSDDGRRSVKLSIDPKKVNKG
LNSTALTAGMLLSGSVLSVEDHGYLIDIGVTGTHAFLPHQKAKNYIKAVKKGPDLKIGEN
LNCLIVEVKNEGRVVCLSIDRSEVAASIATERQNWTLSNLLPGLVVKARVQKVAPLGMKL
TFLSYFTGIVDFMHIDPEKSMSYSPDQVVKACVLSVHPTSRAVRLTLRPPFLHAGGAPRQ
LPAQRMGAVLEEATVKAFYKQFGAIFELDDGTLAFARLKHLSKTRKSFKPEAFKEGCKHK
CRIIAYSLMDEMCIVSLKHQIIEARFLQYQDIHTGDVVQGKVHSLKPIGMQVKVADGIRG
LVPSLHLSDVILKQPEKKYNIGDEVKCRVLECNPEGKKLILTLKKSLVQSKLPVLSNYED
AKPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELGSEPISCPDKVFYEGQVLKVMVLK
CEPQQERLLLSFRLSSKPGPEDKWKCTPKEKQEVKYQIGEIVDVRILKKKDNGLEVSILE
DEDNVVAWIPMLHLSDFVDMSKLLWHCLQEGDVLPRVMYLSDKGEHIILSRKSAVISAVQ
EEKVVRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVV
GQTVIAKVMSIDEEKQRVLLNLKVSECSSGDSAAESFGLLNQYFKELKEIRDLLRRGEPS
ICELVPGKRVHLVVQDVREDGSALFSGSPVTGLTVTATRYHLGDKNIAPGEKRKALVLHV
DALTSEVYVSLREEVLKQRPKRRLRENSQHSAVVQHITEHFAIASLLETGQLAAVPIACH
FNDTFRFDSEKLRVGQKISATLKAVKENNHGVLLAVQGPAKKNVFVRVRNESETALEEMV
PAVKHSLSPGDVVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPIGSIPTSALKAGQ
KVTARVIGGRDVNTHRCLPITHPHFTQSIPELSIRPSEQEGEFTAMLNLKEESSLKQLGL
YNVGQTVTCFVKKYNMLKNWLEVEVTPGIRGRVPHLLLSLNTKVLKHPEKNFKNGQAISA
TVTGTDATERNLCLSLTGIQSLEQDTISVGMIRKVIPHVGLTIALPGGKTGKVSIFHLND
TYTDNPLGNFKVGKIVRCYILSNENGKIQLSLRQSRLNPKINSKVEDIEITSIKDVKKGQ
LVRGYVKSITPSGIFFGLSTSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLGVN
RKQKHIELSLLPEDTGMPSVLPESLGLPQYGAEEEKREADYEEKSEQPKLKTKRRRGNDE
SGQEAKPKKRKICPADENDSGIEVYYREEEENDQEEEAAKKKSTVRKPGEAPRLQVSVGF
TWEEDNAMDIPVLDQKEESSESEEEEDMQFKLKKRTKKEKELEKQKKEKELCKVEAALMD
PSRQPQSADDFDRLVLGSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQEK
LNVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTM
LKRFRQEKSVWLKYASFLLKQGQAEATHRLLERALKALPTKEHVDVISRFAQLEFHSGDT
EHAKALFESTLSSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFKR
YLDYEKKFGTEESVLAVKRAALEYVETKSSLADT
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaagaaaactttcctcgtgggggcatccagaagaaacctgcagaggga
aaaacatgcaagccaaagtcagagcgggacaatttgtttgatgttcaacatgaagaaaaa
tcccagaaaagaaaaaggagccagaaggatcaagaaaagcagaaaaggttcaaggcagac
aaaactgttaaagctgatgttaaagacaatattatgaaaattggaccactgacagttgag
gcgctcagtgagggcatgctgctgctgggctgtataaaagaggttagtgactacgagctc
gccatcagtttgcccaacggcctctctggatttgtgccggtcacacagatcagtgatgcc
tacagcaaactgctgaccaagcaggtggcacaaggagaagtcccagaggagctgaattct
ctcccagacatgttttctccagggacactggtcaggtgcgctgtgaccagcattgagaag
agtgacgatggacgccgcagtgtcaagttatcgattgaccccaagaaggtcaacaagggc
ctgaattctacagcactaacagcaggcatgctgctctctggctctgtgttgagtgtggaa
gaccatggctacctcatagatattggtgtcactgggactcatgctttcctgcctcatcag
aaagccaaaaattacatcaaggcagtcaagaaagggcctgacttgaaaataggcgagaac
ctgaactgcctcattgtggaagtgaagaatgagggcagggtggtctgtttgtccattgat
cgatcagaggtggctgcatccattgccacagagcgacagaactggacactctctaattta
ttgccagggctggtggtgaaagctcgagtgcagaaggtggccccacttgggatgaaactg
acatttctgtcttacttcactggcattgtggatttcatgcacatagacccagagaaatcc
atgagctattctccagatcaagtggtgaaggcctgtgtgctgtctgtacaccccacgtcg
cgggcggtgcggctcacgctgcgcccgcccttcctgcacgccgggggagccccacgccag
ctccctgcccagcgcatgggggcagtgctggaggaggccacggtgaaagccttctacaag
cagtttggagccatctttgagcttgacgatggcactcttgcatttgcacggttgaagcat
ctttcaaaaaccagaaaatcctttaaacctgaggcctttaaggaaggttgcaaacataaa
tgtcggatcattgcctacagcctgatggatgagatgtgtattgtatctctgaagcaccaa
attattgaagcacgatttctgcaataccaggatatccacacaggtgatgtggtgcagggc
aaagttcactctctaaaacccattgggatgcaggtgaaagtggctgatgggattagagga
cttgtgccatccctccatctctctgatgtgatcctgaagcagcctgagaagaagtacaac
ataggagatgaagtcaagtgtcgggtgctagagtgcaatcctgaaggaaagaagctgatt
cttactctaaagaaaagtcttgtccagtcaaagcttccagtcctctcaaattatgaagat
gcaaaaccaggcctgatcacacatggctttgtagtgtgtgcaagggagtttggctgcatt
gtgaagttctacaatgatgtcaaaggtctggtacccaagaatgagctgggctctgaaccc
atatcttgtccagataaagtcttctatgaaggccaggttcttaaagtaatggttttaaaa
tgtgagcctcagcaggaaagactcttgctgtccttcagattatcaagcaagcctggccct
gaggacaaatggaaatgtactccaaaggagaaacaggaagtgaaataccaaataggagag
attgttgatgtgagaatcttgaagaagaaagataatgggttagaagtctccatcttagaa
gatgaagacaatgtggtagcctggatccccatgctgcacctctctgactttgttgatatg
tccaagctcctatggcactgtcttcaagagggagatgtcctgcccagagttatgtatcta
agtgacaagggagagcacattatcttgagtagaaagtctgcagtgatttctgctgtacag
gaggagaaagttgtaagaagcttctctgaaatccagcctgggatgctgttgactggttat
gtgaggaatgtgatgccctttggagtgtttgtggagttcccttttggtgtgacaggactg
gcacctaaagtgagcatgagtgacaagtttgtgacagacaccaaggaccactttgtggtg
ggacaaactgtgattgcaaaggtgatgagcattgatgaggagaagcagcgtgtgctcctc
aatctgaaggtgtctgagtgcagctcaggagattctgctgcagagagctttggcctcctg
aatcaatatttcaaggagctgaaagaaatcagggacttgttgagaagaggagagcccagc
atttgtgagttggtgcctggaaagagggtgcatctggtcgtgcaggatgtgagggaggat
ggctcagcactgttcagtggcagccctgtcacaggcttgactgtaactgccacccgctac
catttgggagacaaaaatattgctcctggtgagaaaaggaaggccttggttcttcatgtg
gatgccctcacgtctgaagtgtatgtttctcttcgggaagaagtgttaaagcaaagaccc
aagcgacggctccgggagaactcccagcactctgcggtggtgcagcacatcacagagcac
tttgccattgcgtctctgctggaaacaggccagctggcagctgtccccatcgcctgccac
ttcaacgacaccttccgcttcgactcggaaaaactgagggtgggacaaaaaatctctgcc
accttaaaagcagtgaaggagaacaaccacggagtcttgttagcagtacagggcccagcc
aagaagaatgtttttgtaagggtgcggaacgagtcagagacagcgttagaggagatggtt
cctgctgtgaaacactcgctgtccccgggggatgttgttactggtaccgttaaatccgtc
aaaccaacccacgtcactgttgctattgatgacaagctgacaggttcaatccatgcatcc
cggattctggatgaagtgcccataggctccattccaacttccgctctgaaagccggacag
aaagtgactgctcgagtcattggaggcagagatgtgaatactcacaggtgcctgccaatc
acccatccacacttcacacaatccattccagagctcagcattcgaccaagtgaacaagaa
ggggaattcacagcaatgctgaaccttaaagaagaaagttccctcaagcaacttggactc
tacaatgttggacagacagtcacctgttttgtaaagaagtataacatgctcaaaaactgg
ctggaggtagaagtcacccctggcattcgaggaagagttcctcacctgctgctgtctctg
aacaccaaggtcttaaaacatccagaaaagaattttaaaaatggccaggcaatatcagct
acagtgactggaacagatgccactgaaagaaacctctgcttgtcactcacaggaattcag
tccctggagcaggacaccatctctgtaggcatgataagaaaggtgattccacacgttggc
ttgaccattgcgctgccaggtgggaagactggcaaagtcagcatctttcacctgaatgat
acttacacagataatcctctggggaacttcaaagttggcaagattgtcaggtgctatatc
ctctccaatgagaatggtaaaatccagttatctctcaggcaatcccggctaaatccaaag
ataaacagcaaagtggaggatattgaaataacaagtattaaagatgttaaaaaaggccag
ctagtgagaggctatgtcaaatcaatcactccatcgggtatattctttggattgtccact
tctctcctgggccgaatcctgttccagaatgtttccccatactttgtacagaaacattcc
ttatatgaaaagtacttgcctgaaggaaaactgctcactgccaaagtacttggagtaaat
agaaaacagaaacatattgagctctctctcctgcctgaggacactgggatgccaagtgtc
ttgcctgaatccctaggcctaccacaatatggagcagaggaagagaaaagagaggcagat
tatgaggaaaaaagcgaacagcctaagctgaagacaaaaaggagaagaggaaatgatgaa
agtggtcaggaggcaaagccaaagaagaggaagatctgcccagcagatgaaaatgacagt
ggaattgaggtgtattaccgtgaggaggaagagaatgatcaggaggaagaggcagctaaa
aagaaatctacggtaaggaagcctggtgaagctcccaggctgcaagtttccgtgggcttc
acctgggaagaagacaatgcaatggatatacctgtgctggatcagaaggaagagagctca
gagagtgaggaggaggaggatatgcagttcaagctaaagaagcgaacaaagaaggagaag
gagctggagaagcagaagaaagagaaggagctttgcaaagtagaggcagctctaatggac
ccaagtcggcagccccagtcagcagatgacttcgaccgcctggtgctgggcagtccaaac
agctccatcctctggctgcagtacatggctttccacctccaggctacagagattgagaag
gccagagctgtggcagagagagctcttaaaacaatctgtttcagggaagaacaggagaag
ctgaatgtctgggtagctctgctgaacttggagaacatgtatggtactgaggagacactg
atgaaggtctttgagagagcagttcaatacaatgaacctctgaaagtcttccagcatctg
tgtgacatctatgccagttctgagaagtacaagcaagcagaggaattgtaccacacaatg
ctgaagcgttttcgtcaggagaaatcagtgtggctgaaatatgcctctttcctcctgaag
caaggccaggctgaggctacccaccggcttctggagcgtgctcttaaggctctgcccacc
aaagaacatgtggatgtcatttcaaggtttgcacagctggagttccattctggggacaca
gaacatgccaaggccctctttgagagcaccctcagcagctatcctaagcggacggacatt
tggtccatctacatggacatcatgatcaagcatggcagccagaaggaagtacgagacatc
tttgagagggtcatacacctgagcttggcaccaaagaagatgaaattcttcttcaaacgc
tacctggattatgagaagaaatttggtacagaagaaagtgtcctggctgttaaaagagca
gcacttgagtatgtggagaccaagagttcccttgctgatacctaa
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