Lonchura striata (white-rumped munia): 110473639
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Entry
110473639 CDS
T05897
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110473639 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110473639 (TAF5)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110473639 (TAF5)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110473639 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
110473639 (TAF5)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
110473639 (TAF5)
STAGA complex
110473639 (TAF5)
TFTC complex
110473639 (TAF5)
SAGA complex
110473639 (TAF5)
SLIK complex
110473639 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_SPT8
WD_LRWD1
Beta-prop_Nup120_160
PEP5_VPS11_N
CDK5RAP3
WD40_like
RAB3GAP2_N
eIF2A
VID27
Motif
Other DBs
NCBI-GeneID:
110473639
NCBI-ProteinID:
XP_021391993
LinkDB
All DBs
Position
6:23337852..23348031
Genome browser
AA seq
783 aa
AA seq
DB search
MAALHEEPAEVAAVQPDPEAGTPPPPPAVPPAAAPAAAPATVVEGEAAGASGDAASLKPV
APGPAASPAALDRQTLVAVLQFLRRSNLRESEEILRREARLLGDDLGATALSPTSAGLLG
GSGSEADSGEALLGRGSSSAAVAIGGSVAAVATSSPGVAAVAAVPPGKVGGVVVVEDQPD
VSAVLSAYNQQGDPTLYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHE
SEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLL
KRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKVFFGLL
KEPEFDVPLDDEDEEGENEEGKPKKKKPKKDNVGSKSKKQDPNAPPQNRIPLPELKDSDK
LDRVMNMKEAARRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADSTVRVW
SVTPKKLRSVKTAADLSLIDKEADDVLERIMDEKTASELKILYGHSGPVYGTSFSPDRNY
LLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHY
QPLRIFAGHLADVTCTRFHPNSNYIATGSADRTIRLWDVLNGNCVRIFTGHKGPIHSLAF
SPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALRFSRDGEILASGSMDNTVRL
WDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVVHLHFTRRNLLLAAGAY
SSQ
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgcatgaggagccggcagaggtggcggcggtgcagccggaccccgaggct
gggacgccgccgccgccgcccgcggtgcctcccgccgccgctcccgccgccgccccggcc
accgtggtggagggagaggcggcgggagccagtggggatgcggcatccctgaagcccgtg
gcgccgggcccggccgcctccccggcggcgttggaccggcagacgcttgtggccgtgctg
cagttcctgcggcgcagcaacctccgcgagtccgaggagatcctgcgtcgcgaagcccgc
ctgctcggtgacgacctgggtgccaccgcgctcagccccaccagcgccgggctcctgggg
ggctccggcagcgaggcggactccggcgaggcgctgctcggccggggctccagctctgcc
gccgtcgccataggaggcagcgtcgccgctgtcgcgacttccagccccggggtggctgcg
gttgccgccgtgccgccggggaaagtcggaggcgtggtggttgtggaggatcagccggac
gtgagcgcggtgctgtcggcctacaaccagcaaggggacccgacgctgtacgaggagtac
tacagcggattgaaacacttcatcgagtgctccctggactgccatcgggcagaattgtct
cagctcttttatcctctctttgtgcacatgtacttggagttggtctacaatcaacatgag
agtgaggcaaagtctttttttgaaaggtttcatggggatcaggagtgctattaccaggat
gacctgcgtgtcctgtcgagcttaaccaaaaaggagcatatgaaaggtaacgagaccatg
ctggatttccgaacaagcaagtttgtgctgcgcatttcccgtgactcttaccagctcctg
aagaggcatcttcaggaaaagcagaacaatcagatctggaacattgttcaggagcatctt
tacattgatatatttgatggaatgcctcgcagtaaacagcagatagatgctatggttgga
agcttggctggggaggcaaaacgagaagctaataaagcaaaggttttcttcggcttattg
aaagaaccagagtttgatgtgcctttggatgatgaagatgaagaaggagaaaatgaggaa
ggaaagccaaagaagaagaaacctaaaaaagataatgtagggtcaaaaagtaaaaaacag
gaccctaatgctcctccccaaaacagaattcctctgccagaactgaaagactctgacaag
ctggatagagtaatgaatatgaaggaagctgcaaggcgagtgcgtcttggaccagagtgc
ctgccctccatctgcttctacacattccttaatgcttaccagggtctgactgcagtggat
attacagatgactccagcatgattgtaggaggctttgctgactctactgtcagagtgtgg
tctgtgactccaaaaaagctacgtagtgtgaaaacagctgcagacctcagtctcattgac
aaagaagcagatgatgtcttggagaggatcatggatgagaaaacagcaagtgagttgaag
attttatatggtcacagtggacctgtctatggcaccagcttcagtccggatagaaactat
ctgttatcctgttctgaggatggcacagtgagattgtggagtctccaaacattcacgtgt
ttggtgggatataaaggacacaattatccagtttgggatacacagttctcaccctatggt
tattactttgtgtctgggggacacgacagagtggctcgtctgtgggctacagatcactac
cagccattacggatctttgctggccatcttgcagatgtgacgtgtacccgatttcatcca
aactccaactatattgctacaggctcagcagacaggactataaggctctgggatgttttg
aatgggaattgtgtaagaatattcactggacataagggaccaattcattcactagcattt
tctcctaatggacgattcctggctactggagcaacagatggaagagttctgctgtgggat
attggacatggcttgatggttggcgaattgaaagggcacacagacactatttatgcgctc
agattcagtagggatggggagattttagcatcaggttcaatggataacacagttcgtctg
tgggatgctgtgaaggcatttgaagatttagaaactgatgactttactacagccactgga
cacataaacttgcctgaaaactcacaggacttgctactgggcacatacatgactaaatca
accccggttgttcacctccatttcacacgcaggaacctgctgctggctgcaggagcctac
agctcacagtag
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