Lonchura striata (white-rumped munia): 110473794
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Entry
110473794 CDS
T05897
Symbol
SAMHD1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03250
Viral life cycle - HIV-1
lsr04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
110473794 (SAMHD1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
110473794 (SAMHD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110473794 (SAMHD1)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
110473794 (SAMHD1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
PDEase_I
Motif
Other DBs
NCBI-GeneID:
110473794
NCBI-ProteinID:
XP_021392301
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Position
20:complement(601305..628164)
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AA seq
603 aa
AA seq
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MGSPAGGPAKRARCEGPRGAGGDPRLWDTERLCQHLARCGVGDPSLLRRFRESGVTGRML
LDLPACAPELIRICCPAERLEVLACLTQLQQQHMEVMKVFNDPIHGHIELHPLLVRIIDT
PQFQRLRYIKQLGGTYFVFPGASHNRFEHSLGVGYLAGCLVRTLKERQPELDITQRDILC
VEIAGLCHDLGHGPFSHMFDGRFIPLTRPDLDWKHETSSVQMFEHLITSNKLEEVMKSYD
LNLEEDMLFIKEQIGGPIDETACVKSWPYRGRPKEKSFLYEIVANKKNGIDVDKWDYFAR
DCHHLGIPNNFDYKRLLVFTRVCEVENQKHICTRDKEVGNLYEMFHTRNCLHRRAYQHKT
GNIIEIMITEAFQKADKFFEIRGSGGKVYQISTAMEDMEAYTKLTDSVYLEILHSSHPEL
EEAREILRKIERRELYRFLGETRPESKKEIIKSNSLAESIANSKPEKDPPDVELKAENFI
VDVISMDYGMKEQNPIDKVHFYCKADPSKAVKISKEQVSKLLPRIFMEQVVRVYYKSQDP
HIISAAKQYFVQWCMQNDFTKPQDGDIVAPHLIPMKETWNKMTDNEHRRASEPSCEQRLP
FDE
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcccggcgggcgggcccgccaagcgcgcgcgctgcgaggggccccgcggcgcc
ggcggcgacccgcggctgtgggacacggagcggctctgccagcacctcgcccgctgcggc
gtgggcgatcccagcctgctgcgccgcttccgagagagcggggtcaccgggaggatgctg
ctggacctgccggcctgcgctcccgagctcatccgcatctgctgcccagctgagcgactg
gaagtgctggcgtgcctgacacagctacaacagcagcacatggaggtgatgaaggttttt
aatgatcctattcatgggcacattgaattgcatcctctgcttgttcggatcatcgatacc
cctcagttccagcgcctccggtatatcaaacagctgggtggcacgtactttgtttttcca
ggagcctctcacaatcgctttgaacactctctgggggttggctaccttgcaggatgtctg
gttcgtacactgaaggagagacaaccagaactggatataacccaacgagacatcctctgt
gtagaaattgctgggctttgtcacgatttgggtcatgggccattttcacacatgtttgat
ggaagatttattccactcactcgtccagatttggattggaagcatgaaacttcttctgtt
caaatgtttgagcacttgatcacttccaataaactagaagaagtcatgaagtcctatgat
cttaacctggaagaagatatgttgttcatcaaggaacaaataggagggcctatagatgaa
actgcctgtgtgaaatcgtggccctaccgtggtcgaccaaaggagaaaagtttcctctat
gagattgtagctaataaaaaaaatggcattgatgttgacaagtgggattattttgcaagg
gattgtcatcacctgggaatcccaaataattttgactataagcgattgcttgtcttcact
cgggtctgtgaagtggaaaaccagaagcacatctgcacccgtgacaaggaagttggaaat
ttgtatgagatgttccacacccggaattgcctgcaccggagagcataccagcataagact
ggcaacatcattgaaataatgataacagaagcctttcaaaaagcagacaaattttttgaa
ataagaggttctggaggaaaagtgtatcagatttctacagcaatggaggacatggaagcc
tacactaaactaactgactctgtctacctggaaattctgcactcaagtcatccagaactg
gaggaggcacgagaaattttgcgtaaaatagaacgacgtgaattatacaggtttttagga
gagactcgacctgaatcaaagaaggaaattataaagagtaacagcctggcagaaagcatt
gctaattccaagccagagaaggatcctccagatgtggagctaaaggctgagaatttcata
gttgatgttatcagcatggattatggaatgaaggaacagaatccaattgataaggttcac
ttctattgcaaggctgatccttccaaggcagtcaaaatcagtaaagagcaggtttcaaag
cttttacccagaatatttatggagcaggttgtccgggtttattacaaaagtcaggatcca
catattatttcagctgcaaaacagtactttgttcagtggtgtatgcagaatgatttcacc
aaaccacaggatggtgatattgttgctcctcatctaattccaatgaaggaaacctggaat
aagatgacagataatgaacacaggagagcctcagaacccagctgcgaacaaaggcttcct
tttgatgagtaa
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