Lonchura striata (white-rumped munia): 110473819
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Entry
110473819 CDS
T05897
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110473819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110473819
03036 Chromosome and associated proteins [BR:
lsr03036
]
110473819
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110473819
Coactivators
SAGA/TFTC/STAGA complex
110473819
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
110473819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
110473819
NCBI-ProteinID:
XP_031361733
LinkDB
All DBs
Position
11:complement(20514632..20660059)
Genome browser
AA seq
994 aa
AA seq
DB search
MAAGASDPLEEMLLFSEEVDEKALSDLVGSLESQLAGGRGPAEPPPPRTSVPSQQPQQGS
LAGGSSPGRQQHGRPAPPPAPGAGEAAGRPGSAGSRASAQGPLPSPSPPAAAAAAAGRGA
SVNSSSVQQSHGAAPGGGSPAAPAPPQPAAPAQPVNNHVAAAAAAARDAGSPGPGPSPTA
ADGAPGAAGGGGAAEAAEGAAAAPCPGQAAPNGEGAGARAAAVPPVGGHGGAAAAQPQPA
PGALPAVTALGASASPAPAPPAPGSAPPAPAAPAAPKPAVTAKAGAALPAAPQAVSPRPA
LGAAPRLVAPQLIVRPPPHATIQLPPGFTIPPGMVLVRTDAGQLVMVPQQALAQAQMQAQ
VQTQGQGPANMSPRLSVPTAGPVFRLSTAQQPTSVATSSVRLGLPVQAKVVPSTAAPASA
TATLPGGAVLSHTTVSVATTSAPNLLKTTVAGGSAGSQQPALLSGAQSQGSGQPRLPLPP
HTAAQVPAQPLVIPSSPVPGTTVVSQEMQENVKKCKNFLATLIKLASHNSPSPETSRNVK
ALVQDLLDAKIDPEEFTGRLQTELKSSPQPYLVPFLKKSLPALRQSLLNSQHLVLQGQPS
QQSLQQTKLSQVIPQSASGSISSVVTTQTIGIRQPNNICTVSVSNTVQPPQVKVVQSNQS
SQLQIIQSTSAQTVKRTPACQTTQIRMPVVITQTIRPQGTVGKAPTIQASKSPGGFGVQV
SANQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARILATNSDLVGAQIQSCKDEPF
LAAIPLHKRILETAKKLGITDVPAEVVTFISHATQSRLRTVIEKVTVITQHRMESYKDDE
WYEQATDVRSQLKFFEQLERLEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQ
QQELAQMRQRDANLTALAAIGPRKKRKLDAPGLLTMGGEGVGVCGGSPAGLGTASPRQYP
RQKITRVNLRDFIFYMEHERQMSRSLLLYRALLK
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggtgcgtcggacccactggaggagatgctgctcttctccgaggaggtggac
gagaaggcgctcagcgacctggtgggatccctggaatcgcagctggccggcggccgcggc
cccgccgagccgcctccgcccaggacctccgtcccgtcccagcagccgcagcaggggagc
ctggcggggggcagcagccccggccggcagcagcacggccgccccgcgccccctcccgcg
cccggggcaggggaggcggcgggacgccccggcagcgcggggagccgagcctccgcccag
gggcctctcccgtccccgtctcccccggcggcggcggcagcggcggcggggaggggagcg
agtgtaaacagtagtagtgtgcagcaatcacatggagcggctcccggcggcggcagcccc
gccgctcccgccccgccgcagcccgccgcccctgcccagcctgtcaacaaccatgtggcc
gccgcagccgccgccgctcgggacgcggggagccccggccccggccccagcccgaccgcc
gccgacggcgcgcccggggccgcggggggcggcggagcggcggaagcggccgagggcgcc
gccgccgccccgtgccccggccaggcggcgcccaacggggagggcgcgggggcccgggcg
gccgcggtgccgcccgtcggcgggcacggcggggcggccgccgcgcagccccagcccgcg
cccggtgcgctgcccgcggtcaccgcgctcggcgcctccgccagccccgcgcccgcaccg
ccggccccgggctcggccccgccggctcccgcggcccccgccgcgcccaagcccgcggtc
accgccaaggcgggcgctgccctgcccgccgccccccaggccgtgtcgccgcggccggcg
ctgggcgctgctccccggctcgtggccccgcagctgatcgtgcggccgccgccgcacgcc
accatccagctgccgcccggcttcaccatcccgcccgggatggtgctggtgcgcacggac
gccgggcagctcgtgatggtgccccagcaggctctggcacaggctcagatgcaggcccag
gtgcagacacagggacagggtcctgccaacatgtcacccaggctttctgtgcccacagct
ggccccgtttttcgcctgtccacagctcagcagccaacgtccgtggccacctccagcgtc
cgcctgggcctcccggtgcaagccaaggtggtgccatccacggcggcgcccgccagcgcc
acagccacgctgccaggaggggctgtgctctcacacaccacggtatcagtagctacgacg
agcgctccaaatttgttgaagacgacggtggcgggtggaagcgcgggctcgcagcagccg
gcgctgctcagcggcgcgcagagccagggctcggggcagccccggctgccgctgcccccg
cacacggcagcgcaggtgccagcgcagcccctggtcattcccagctctcctgtgcccgga
accaccgttgtgtcccaggaaatgcaagagaatgtgaaaaaatgtaaaaactttttagct
acccttataaagcttgcttctcataattcaccatctccagaaacgtcccgcaatgtgaaa
gctctggttcaagatttgttggatgcaaagattgatccagaagaatttacaggccgcctt
caaacagaactcaaatcatctcctcagccatatcttgtacctttccttaagaaaagtcta
cctgcactgagacaatctttactgaatagtcagcatttggttttgcaaggacagccgtct
cagcagtcactccaacagaccaagctctcacaagttatacctcaatctgcctcgggaagc
atctcctctgttgtcacgacgcagacaataggaataaggcaaccaaacaacatttgcaca
gtctctgtatcaaatacagtgcagcctcctcaggttaaggtggtacagtcaaatcagagt
tctcaactgcagattatccagtcaacatctgctcaaactgtgaaacgaacccctgcttgc
cagactacccagattaggatgccagtggtaataactcagaccattagaccacaaggcaca
gtagggaaggcaccaacaatacaagccagtaaaagtcctgggggctttggtgttcaggtc
tctgcaaatcagaaaaacaagctgaatgaccctggaggtggttctttcagagatgatgat
gacatcaatgatgttgcctctatggctggcgttaatcttaatgaagaaagtgcccgaatt
ctggctaccaactctgacttggttggagcccagatccagtcctgtaaagatgaacccttt
cttgctgctatacctctccataaacgcatacttgaaacggctaaaaaactaggaattact
gatgtgccagctgaggtggttacttttatttcccacgcaacacagagcagattgaggaca
gtgatagagaaggtgacggtgataacccagcaccggatggagtcgtacaaagatgatgag
tggtatgaacaagccacggatgtccgatcacagctgaagttctttgagcagttggagcgt
ttggaaaagcaaaggaaagatgaacaagagagggagattttgctgaaggctgccaagagt
cgctcaaggcaagaagacccagagcaagctagactgaaacaaaaagcaaaggagatgcag
cagcaggagctggcccagatgaggcagagggatgccaacctgacggcgctggcagccatc
ggcccccgcaagaagaggaagctggatgctcctggcctgctgaccatgggaggagagggc
gtgggggtgtgcgggggcagcccggccgggctgggcacggcctcgccccggcagtacccc
cggcagaaaatcacacgagtcaacctcagggacttcatcttctacatggaacacgagcga
caaatgagccgttccctcctgctctaccgagctctgcttaaataa
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