Lonchura striata (white-rumped munia): 110474093
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Entry
110474093 CDS
T05897
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110474093 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110474093 (BARD1)
04121 Ubiquitin system [BR:
lsr04121
]
110474093 (BARD1)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110474093 (BARD1)
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110474093 (BARD1)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
110474093 (BARD1)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
110474093 (BARD1)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
110474093 (BARD1)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
110474093 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_4
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
zf-C3HC4_2
ANK_LRRK2
zf-C3HC4
NIBRIN_BRCT_II
zf-RING_UBOX
zf-rbx1
RTT107_BRCT_5
zf-RING_10
zf-C3HC4_4
Siva
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
110474093
NCBI-ProteinID:
XP_021392884
LinkDB
All DBs
Position
7:2711618..2751737
Genome browser
AA seq
786 aa
AA seq
DB search
MREALRGRSGNQPAPGSPLRPAAPSMALPGHPWSHTRVALGRLERALSCSRCGGVLREPV
SLGQCEHVFCLSCVGDCIGTECPVCHMPAWVQDTQINRQLDNMIQLCSKLRQLLGADASD
STEDTSTPADSELEKKSKKEQIKMWFSPRSRKIRCVVNRRQAGTKSNDLGQDTSSVYDFF
PSPPHEKPSKPTKRPSQRQIKKMKEKHLADINKEWSLEKPEQKRAKEKIPKEKCVTICSQ
PVVLCTEEPESLEERPQQESVKEADSISNTEDVEVLPQVEFPEKKDNSEVACSARDSKEK
NSAEALLSMANEVTPLKRGREQSRLQGTPQPKRARSERGIPGKSGGQSDGLEESLEGSPI
SPATEQTPVQTSSASKLTDTGMKTRSAALQAINSPPLSESPSTPSTSKTYSQVATPLSPS
VLKSPGVNTIARRNYKGETLLHVASIKGDLAAVEQLLKNGADPNVKDNAGWTPLHEACNH
GHREVVELLLQHRALVNTTGYQNDSPLHDAARNGHVAVVELLLLHGASRDAVNIFGLRPV
DYAESKKMKSVLMLPLKNESLSLNQPSEALSSSQPRNGPLGILGSNLSVEQQKLLNKLAT
VLKAQRCTEFNSRVTHLVIPDVPMPTTVKCMMAVLTGCWVLKFEWVQACLQSSAREQEEK
YEVQGGPQRGRLNREQLLPKLFDGCYFYFLGPFKKHQKSDLLELVKAAGGQVLVRQPKPD
SDVTQTINTVSYHAEPTSDQRLCTQYIIYDVASRFQPEKIRQGKVWMAPSSWLIDCVMSF
QLLPVK
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgagggaggcgctgcgcgggcgctcgggcaaccagccggccccaggcagccccctccgc
cccgccgccccctccatggcactgcccggccacccctggtctcacacccgcgtggcgctg
gggcggctggagagggcactgagctgctcccgctgcggcggtgtcctgcgggagcccgtg
tccctggggcagtgcgagcacgtcttctgcctgtcctgtgtgggtgactgtattggcacc
gagtgccccgtgtgccacatgccagcctgggtgcaggacacacagatcaaccggcagctg
gataacatgatccagctctgcagcaagctgcggcagctcctgggcgccgacgcctcagat
tcaacagaggatacatccacaccagctgactcagagttggaaaaaaagagcaagaaggaa
cagataaagatgtggttcagcccaagaagcaggaagattcgatgtgtcgtgaacagacgt
caggctgggactaaaagcaatgaccttggtcaagacacatcttcagtttatgatttcttt
ccttcccctcctcatgaaaagccctccaagccaacaaaaagaccaagtcaaagacagatt
aagaagatgaaggagaaacatctagcagacattaacaaagaatggagcttagagaaacct
gagcagaaaagagccaaggagaagattcccaaggaaaagtgtgtgaccatctgcagtcaa
ccagtagtgctgtgcactgaggaaccagagagtcttgaagaaagacctcagcaggaatct
gtgaaggaagctgactccatcagtaatacagaagatgtggaagttctgccacaggtggaa
ttcccagagaagaaagataacagtgaggttgcgtgctctgcacgagatagcaaggaaaaa
aatagcgctgaggcattgctgtcaatggcaaatgaagttacacctttgaaacgtggaagg
gagcaatccagacttcagggtactcctcagcctaaaagagcaagaagtgagaggggcatt
cctgggaagtcaggcgggcagtctgatggcttagaggagtcactggagggctcccccatc
tccccagccactgaacagacaccagtccagacttcctctgcatccaaactcactgacact
ggaatgaagacaagatctgcagcccttcaagcaattaacagtcctccactttcagaatct
ccctctaccccatccacttctaagacttacagtcaagtagcaacaccactcagtccttct
gtgttgaaatcccctggtgtcaacacaattgccagaagaaattacaagggagagactttg
ctccatgttgcttccatcaagggtgacttagcagctgtggagcagctgctgaaaaacggt
gcagatcccaatgtcaaagataatgctggttggacaccactgcacgaggcgtgtaaccac
gggcacagggaggtggtggagctgctgctgcagcaccgggcgctggtgaacaccacgggc
taccagaacgactccccgctgcacgacgccgccaggaacgggcacgtggccgtggtggag
ctgctgctcctgcacggcgcctcccgggatgctgttaatatatttggtctgcggcctgtg
gactatgcagaaagcaaaaagatgaaatctgtgctaatgttgccactgaagaatgaatca
ctttcacttaaccagccctctgaggcactgagctccagccagccaagaaatggacccctt
ggtatactggggagcaatcttagtgtggagcagcagaaattgctgaacaaattagcaaca
gtcttgaaggcccagaggtgcactgaatttaatagcagagtaactcatcttgttatccct
gatgttccaatgccaactactgtcaaatgcatgatggctgttctgactggatgttgggtc
ctcaagtttgaatgggtgcaagcctgtctgcagagctcagctcgagaacaagaagagaag
tacgaagtccaaggtggcccgcagcgagggcggctcaaccgggagcagctgctgcctaag
ttgtttgatggatgctacttctattttttgggacctttcaaaaagcaccagaagagtgac
ctgctggagctggtgaaagcagcgggcggccaggtcctggttaggcagcccaaaccagac
agtgatgtgacacagaccatcaacacagtgtcctaccacgcagagcccacctctgaccaa
aggctctgcactcagtacatcatctatgatgtggcttccaggttccagccagagaaaatc
cggcagggcaaggtgtggatggccccctccagctggctcatagactgtgtgatgtcattt
cagctcctgcctgtgaagtga
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