KEGG   Lonchura striata (white-rumped munia): 110474139
Entry
110474139         CDS       T05897                                 
Symbol
SF3A1
Name
(RefSeq) splicing factor 3A subunit 1 isoform X1
  KO
K12825  splicing factor 3A subunit 1
Organism
lsr  Lonchura striata (white-rumped munia)
Pathway
lsr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110474139 (SF3A1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsr03041]
    110474139 (SF3A1)
Spliceosome [BR:lsr03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    110474139 (SF3A1)
 Complex B
    110474139 (SF3A1)
 Complex C
   U2 SnRNP specific factors
    110474139 (SF3A1)
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Ubiquitin_2 Rad60-SLD Plug_translocon
Other DBs
NCBI-GeneID: 110474139
NCBI-ProteinID: XP_021392982
LinkDB
Position
15:1499443..1512976
AA seq 815 aa
MDDPDCSSSSVAERLRRRMDKGSCVPLFGMPNPDSPSPFAMQLSLLQPEEEPKEEAAPAK
PVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHK
VSEFKEGKAQEPSAAIPKVMQQQQSAQQQLPQKVQAQVIQETVVPKEPPPEFEFIADPPS
ISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKI
LIPPKGLLLKLKKEAENPKEVLDQVYYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHD
FVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDEKQEK
TDEPPAQLDQDTQVQDMDEGSDDEDEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKAS
KPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAP
GLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQA
NITLQEQIEAIHKAKGLVPEDDSKEKIGPSKPNEIPQPPPPSSASNPPASAQPITSVPRP
PTMPPPVRAAVVSAVPVMPRPPMTSVVRLPPGSVIATPMPPIIHTPRINVVPMPPSAPPI
MSPRPPPMIVPTAFVPAPPVAPVPSPAPMPPVHPPPPMEDEPVSKKLKSEDSLIPEEEFL
RRNKGPVTVKVQVPNMQDKTEWKLNGQVLVFTLPLSDQVSVIKVKIHEATGMPAGKQKLQ
YEGIFIKDSNSLAYYNMTSGSLIHLALKERGGRKK
NT seq 2448 nt   +upstreamnt  +downstreamnt
atggatgatccagattgttcaagcagttcagtggctgagaggctgaggaggaggatggat
aaaggttcctgtgtgccattgtttgggatgcctaatcctgactccccttcaccttttgca
atgcaactgtctttattacagccagaagaggagcctaaagaggaagcagcaccagccaag
cctgtggtgggaattatttaccctcctcctgaggtcaggaatattgtggacaagactgcc
agctttgtagccagaaatggtccagaatttgaagcccgaattcgtcagaacgaaataaat
aaccccaagttcaacttcctgaaccccaacgacccttaccatgcctactaccggcacaag
gtcagcgagttcaaggagggcaaagcccaggagccctcggctgccatccccaaggtcatg
cagcagcagcagagtgcccagcagcagctcccacagaaggtgcaggcccaggtgatccag
gagaccgtggtccccaaggagcccccgcccgagttcgagttcatcgcggaccctccgtcc
atctcggcctttgacctggacgtggtgaagctcacggcgcagttcgtggcccgcaacggg
aggcagttcctcacccagctcatgcagaaggagcagaggaattaccagtttgatttcctt
cgcccccagcacagcctcttcaactacttcaccaagctggtggagcagtacacaaagatc
ttgatcccaccaaagggcttactcctcaagctcaagaaggaggccgaaaatcccaaggaa
gtcctggatcaggtctactacagagtggagtgggccaagttccaggagcgagagagaaag
aaggaagaggaggagaaggagaaggagcgtgttgcttatgcccagattgactggcatgac
tttgtggttgtggaaacagttgacttccagcccaacgagcaagggaatttccctcctccc
accactccagaagagctgggagctcgaatcctgatccaggagcgttatgagaagtttggg
gaaagtgaggaggtggagatggaggtggaatcagatgaggaagatgaaaagcaagaaaaa
acagatgagcctccagcccagctggatcaagacacacaagtgcaggatatggatgagggg
tcagatgatgaagatgaaggtcagaaggttcctcctcctccagaaaccccgatgccaccc
ccgctccctcccacaccagatcaggtcattgtgcggaaagattatgatcccaaagcctca
aaaccattaccacccgccccggctccggatgagtacctggtgtctcccatcactggagaa
aagattcctgccagtaaaatgcaggagcacatgaggattgggctcctggatccccggtgg
ctggagcagcgggatcgatccatccgggagaagcagagtgatgacgaggtctacgcccca
ggtttggacattgagagcagcctgaagcagctggcagagcgtcgtactgatatctttggt
gtagaagagactgccattggtaaaaagattggtgaagaagaaatccagaaaccagaggaa
aaggtgacctgggatggccactcaggcagcatggcccgcactcagcaggctgctcaggcc
aatatcactctgcaagagcaaattgaagccatccacaaggccaagggactggtgccagaa
gatgacagcaaggagaagattgggcccagcaaacccaatgagataccccagccaccccct
ccctcctcagcctccaacccccctgccagtgcccagcccatcacgtctgtacctcgtcca
cccactatgcctcctcccgtccgcgccgccgtggtttctgcagtgccggtcatgcctcgt
ccccccatgacgtccgtggtccggctgcccccgggatccgtcatagccacccccatgcct
cccatcatccacaccccacgcatcaacgtggtgcccatgcccccctctgctccccccatc
atgagcccccgcccaccccccatgatcgtccccacagcctttgtccctgctcctcccgtg
gctccggtcccatccccggcaccaatgcctcccgtccaccccccgccacccatggaggat
gagccggtctccaagaaactgaagagtgaggacagcctgattccagaggaggaatttctg
cgcaggaacaagggcccggtcacggtcaaagtccaggttcccaacatgcaggacaagacg
gaatggaagctgaacggccaagtgctggtgttcaccctgcccctctcagaccaggtgtct
gttataaaggttaagatccacgaggccacagggatgccagctgggaagcagaagctgcag
tatgagggcatcttcatcaaggattccaactccctggcttattacaacatgacaagtggc
tctctgattcacctggcactcaaagagagaggaggcaggaagaaatag

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